Gene detail information of Glyur000385s00019806 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G43930.1 | 1.00E-91 | BRCT domain-containing DNA repair protein |
| NR | AES73488.2 | 0 | BRCT domain DNA repair protein [Medicago truncatula] |
| trEMBL | tr|G7J947|G7J947_MEDTR | 0 | BRCT domain DNA repair protein {ECO:0000313|EMBL:AES73488.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00385 | 117688 | 122968 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000385s00019806.1 | PF12738.2 | PTCB-BRCT | 53 | 107 | 7.90E-09 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.612 |
| SRR1783600 | control | 3.588 |
| SRR1783602 | moderate drought stress | 4.989 |
| SRR1811619 | moderate drought stress | 5.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 5.486 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 5.424 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 7.306 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 7.432 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 5.413 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.071 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.927 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.928 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 11.756 |
| SRR2868004 | Drought Stress (root) | 9.703 |
| SRR2967015 | Control (root) | 10.422 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 6.342 |
| SRR9715740 | Leaf | 8.644 |
| SRR9715741 | Leaf | 5.456 |
| SRR9715739 | Root | 1.170 |
| SRR9715742 | Root | 4.904 |
| SRR9715743 | Root | 2.457 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 25.120 |
| SRR8749028 | MeJA induced 9h | 17.244 |
| SRR8749029 | MeJA induced 9h | 15.459 |
| SRR8749030 | Uninduced | 9.813 |
| SRR8749031 | Uninduced | 6.489 |
| SRR8749032 | Uninduced | 5.857 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 11.163 |
| SRR8400027 | Control - Root | 11.578 |