Gene detail

Gene detail information of Glyur000385s00019805

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G13850.4	2.00E-09	glycine-rich RNA-binding protein 2
NR	XP_002522811.1	2.65E-14	glycine-rich RNA-binding protein, putative [Ricinus communis]
COG	YP_003267833.1	2.00E-09	RNP-1 like RNA-binding protein [Haliangium ochraceum DSM 14365]
Swissprot	tr\|Q9LIS2\|RBG4_ARATH	2.00E-12	Glycine-rich RNA-binding protein 4, mitochondrial (Precursor)
trEMBL	tr\|B9S9Z2\|B9S9Z2_RICCO	1.00E-14	Glycine-rich RNA-binding protein, putative {ECO:0000313\|EMBL:EEF39662.1}

Sequence

Transcript Sequence

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00385	111287	112026	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0000166 nucleotide binding

GO:0003676 nucleic acid binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000385s00019805.1	PF00076.17	RRM_1	6	55	1.40E-09

Expression pattern

SRA Experiment	Description	TPM
SRR1783599	control	0.101
SRR1783600	control	0.008
SRR1783602	moderate drought stress	0.000
SRR1811619	moderate drought stress	0.000

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.623
DRR006522	Root Winter glycyrrhizin high producing strain	0.323
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.307
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.641
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.362

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	3.372
SRR2868004	Drought Stress (root)	1.623
SRR2967015	Control (root)	0.338

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.230
SRR9715740	Leaf	0.269
SRR9715741	Leaf	1.376
SRR9715739	Root	0.207
SRR9715742	Root	0.000
SRR9715743	Root	0.000

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	20.590
SRR8749028	MeJA induced 9h	16.785
SRR8749029	MeJA induced 9h	19.811
SRR8749030	Uninduced	1.634
SRR8749031	Uninduced	1.056
SRR8749032	Uninduced	0.542

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.415
SRR8400027	Control - Root	0.623