Gene detail information of Glyur000385s00019804 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G79850.1 | 2.00E-06 | ribosomal protein S17 |
| NR | XP_003597741.1 | 2.86E-16 | 30S ribosomal protein S17 [Medicago truncatula] |
| Swissprot | tr|P17092|RR17_PEA | 8.00E-14 | 30S ribosomal protein S17, chloroplastic (Precursor; Fragment) |
| trEMBL | tr|B7FMT1|B7FMT1_MEDTR | 1.00E-16 | Uncharacterized protein {ECO:0000313|EMBL:AFK34005.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00385 | 109483 | 109668 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000385s00019804.1 | PF00366.15 | Ribosomal_S17 | 2 | 26 | 6.60E-05 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.310 |
| SRR1783600 | control | 3.785 |
| SRR1783602 | moderate drought stress | 10.202 |
| SRR1811619 | moderate drought stress | 10.480 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.329 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 5.069 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 10.699 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 9.608 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 6.031 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 6.286 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.844 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.188 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.794 |
| SRR2868004 | Drought Stress (root) | 0.175 |
| SRR2967015 | Control (root) | 1.136 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.583 |
| SRR9715740 | Leaf | 1.703 |
| SRR9715741 | Leaf | 1.484 |
| SRR9715739 | Root | 1.457 |
| SRR9715742 | Root | 1.723 |
| SRR9715743 | Root | 0.714 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.382 |
| SRR8749028 | MeJA induced 9h | 0.332 |
| SRR8749029 | MeJA induced 9h | 0.601 |
| SRR8749030 | Uninduced | 1.577 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 1.313 |
| SRR8400027 | Control - Root | 1.486 |