Gene detail

Gene detail information of Glyur000385s00019802.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G26260.1	0	3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 2
NR	XP_004501411.1	0	PREDICTED: 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 2-like [Cicer arietinum]
COG	YP_002604520.1	3.00E-54	3-beta hydroxysteroid dehydrogenase/isomerase family protein [Desulfobacterium autotrophicum HRM2]
Swissprot	tr\|Q67ZE1\|HSDD2_ARATH	0	3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 2
trEMBL	tr\|G7J951\|G7J951_MEDTR	0	3beta-hydroxysteroid-dehydrogenase/decarboxylase {ECO:0000313\|EMBL:AES73492.2}

Sequence

Transcript Sequence

>Glyur000385s00019802.1
ATGGCTGCAGAGGAAGGGTGGTGCGTGGTGACGGGGGGTCGTGGCTTTGCGGCTCGTCACTTGGTGGAAATGCTAATCCGATACAACAACTACTGTGTTCGCATCGCCGATTTGGGACCCACCATTGAGCTCGAACCCTCTGAGCAATTGGGGCTTCTTGGCCAGGCTATGCACTCCGCATTTGAAGGAGCTGAGGTTGTGTTCCATATGGCTGCTCCGAATTCTTCCATTAACAACTACCAGCTGCATTATTCTGTCAATGTCGAGGGAACGAAGAATGTCATCAATGCTTGTGTGGAGCTAAAAGTGAAGCGACTCATTTACACCAGTTCTCCCAGCGTCGTGTTTGATGGAGTTCATGGAATTCACAACGGAAACGAATCATTGCCCTATCCACCTTCGCATAATGATCATTATTCAGCGACTAAAGCCGAGGGTGAGGCATTGGTTATTAAGGCTAANGGGACTGATGGGCTTCTAACGTGTTGCATACGCCCTAGCAGCATTTTTGGGCCCGGTGATAAATTGTTGGTGCCTTCATTAGTTGATGCTGCCCGGGCAGGGAAATCCAAGGTAAATGTTGTTCTTCCTCCTCCTATTCATTTCATTATTGGTGATGGCAATAACATTTATGATTTCACTTATGTTGAAAATGTGGCTTATGCCCATATATGCGCTGAGCGAGCTCTAGCTTCGGAGAAAAGCATTTCAGAAAAAGCTGCAGGAGAGGCATATTTCATCACGAATATGGAACCTATAAAGTTTTGGGAGTTCATGTCACTTATTTTGGAAGGCCTTGGATACAAAAGGCCAAGAATAAAGATCCCTGCTGTTGTTATCATGCCAATTGCACATATGGTGGAGTGGATATATAGGCTGCTAGGCCCATATGGGATGAAGGTGCCTCAGCTGACCCCTTCAAGAATAAGACTCCTGTCTTGCAGCAGATCTTTTGATTGCTCAAAAGCAAAAGATCGCCTTGGCTATGCACCNATCGTAACTCTACAGGAGGGTCTGCGGAGGACAATTGAATCATACCCACACTTGAGGGCCGAAAATCAACCTAAAACTAAAAGAGAAGGTCCCTCAAAAGCTTCTGTATATCTTGGAAGCGGAAGAGTTGCTGACACCTTGCTTTGGAAGGATAAAAAGCAAACTTTCACTACATTGTTAGTCTTGATTGCGATATATGTCAACTTCATTGCATCTGAGAATACCTTTGTTACTGCTCTTTCAAAGCTTCTGNTGTTCACATCAATCTTTTTATTTGGTTATACGGTTGAGAAAATGCCCACATCATGGTTTCACTTATCAGAAGATAGGTCACATAAGATTGCTATCTCAGCAGCCTCATCNTGGAATTTTGCTGTGAATGGTTTGAAATCCCTTGCAGAAGGAAATAANTGGGTGCTTTTCTTTAAGGTCGTCTTCTCTCTGCTCATTCTTAGCTTCCTGGGAGCCTTTTCACTTAAGAACTTATATACTATAGGACTTTCCTTTGCGTTTATAGCTTTCTACGTTTATGAAAAGAAGGAGGAAGACATTGACGGCATATTTATAAGAACGCATTCTTTTGGATGCAAATTGAAATCTGATTTCACCAGGAAGTTTCTTTCTTCAAAGAAGATTGATTGATAGCTTTTTTTTTGGTCGGTAAGATTGATTGATAGTAGTGTACCCAAAAAACGATTGATTGATACCTTGAAGCGCTAGTTTTTTTTTCTTAGACAAGGTCTTCATCTACCCCACGTTGGGTATGGTTGTACAATTATTGCAATGTAATTTGATA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00385	96303	103211	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K07748	E1.1.1.170, NSDHL, ERG26	EC:1.1.1.170	Steroid biosynthesis	map00100

Gene Ontology

biological_process

GO:0006694 steroid biosynthetic process

GO:0055114 oxidation-reduction process

molecular_function

GO:0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity

GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000385s00019802.1	PF01073.14	3Beta_HSD	9	276	8.90E-67
Glyur000385s00019802.1	PF02453.12	Reticulon	374	519	1.70E-27

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	16.773
SRR1783600	control	16.957
SRR1783602	moderate drought stress	12.895
SRR1811619	moderate drought stress	12.784

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	14.428
DRR006520	Root Summer glycyrrhizin high producing strain	14.008
DRR006521	Root Winter glycyrrhizin high producing strain	5.790
DRR006522	Root Winter glycyrrhizin high producing strain	5.721
DRR006523	Root Summer glycyrrhizin low producing strain	11.634
DRR006524	Root Summer glycyrrhizin low producing strain	11.845
DRR006525	Leaf Summer glycyrrhizin high producing strain	5.323
DRR006526	Leaf Summer glycyrrhizin high producing strain	5.042

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	36.047
SRR2868004	Drought Stress (root)	26.974
SRR2967015	Control (root)	27.388

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	7.681
SRR9715740	Leaf	4.747
SRR9715741	Leaf	5.951
SRR9715739	Root	8.707
SRR9715742	Root	11.825
SRR9715743	Root	10.464

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	22.786
SRR8749028	MeJA induced 9h	16.074
SRR8749029	MeJA induced 9h	13.505
SRR8749030	Uninduced	4.019
SRR8749031	Uninduced	2.208
SRR8749032	Uninduced	3.834

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	28.787
SRR8400027	Control - Root	31.374