Gene detail

Gene detail information of Glyur000385s00019801

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G45700.1	0	sterile alpha motif (SAM) domain-containing protein
NR	XP_004501410.1	0	PREDICTED: DNA cross-link repair protein SNM1-like [Cicer arietinum]
COG	YP_007284873.1	2.00E-09	hypothetical protein Halru_2151 [Halovivax ruber XH-70]
Swissprot	tr\|Q38961\|SNM1_ARATH	8.00E-78	DNA cross-link repair protein SNM1
trEMBL	tr\|I1K8I7\|I1K8I7_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA06G06090.1}

Sequence

Transcript Sequence

>Glyur000385s00019801.1
ATGAGCTCCACAGCTACAATCAGTTTGGATCGAACTCCCTTCGACGATAACGATGATTTCGAGGTTCCACTTACCCAGACAACAACAACTTTCAACACCCTCACCAACTCCGACAGTCACCGCCCATCCAAGAAACCCAAACACAAAACGACCGCGTTCGGTGGCATTGACAAGGAGAACGTTCCCCCTTATTANCATTATTCGCCCTCTCCCACTCGCAGCGACGGTTACTACGAAATCGAAAACTGTAGCTTGGATTTCATTCCTTCCACCCTAGATTCCGATGGCAACGTTCAACTTCAAACTGTTCCTTCTCCTGCGTCGGAGCCGAAAGTGAAGGGGGCTTATTCTCACAATTCGATTGAGTCTAAGCTGGTGGCGTCGAGAACAAACGCACTTAGCTTTGCAGAGGCTGATTCCGACCTGAATTTGTGCGATGAGTTAGATAGCTCCGTCCAATGTCCCCTNTGTGGGGTTGATATTTCTAACCTAACTGAGGAACAGCGACATCTTCATACCAATCATTGTCTTGATAAAGGAGAAGATGTAAGATACCACCCCCTTTCTTCATCAATGGTAATTTGGGAAGAAGTTGATTGGGACACGCTGCAATGGCTGACAGAAGAGGATCTCTTAAGCATGGGTATCACTGCACTTGGTCCCAGAAAAAAGATTGTGCATGCCCTATCAGAACTTAGAAAAGGAAGTGCCCCTTCAAACGAGAAACATGAGGATGCTGTGGCAGATCCTAGAAGGATTAGAAACCAGAAAGTCAAATTGCAACATGACAAACATGAAAGAAAAGTTGATGGCTCTGGTAAACCAGCAGCAAACAAATTAATTACCGAATATTTTCCAGGATCTGCTACCAATGTGAAGAAAGTTTCTGCCGCTCATGGAGAACAACAGGAAACGAAGAGCAGTGGGTCGGTTTCTGGTCGTAACCACAAAGCAAAAAATATGTCAACAAATAGAAAGCTTCGTGATGTTCCCAAATGGTGTAGCATACAAGGAACGCCTTTCCGAGTGGATGCTTTCAAATACCTAAGAGGAGATTGTTCTCACTGGTTTCTCACACACTTCCACATGGACCATTATCAAGGTCTCACCAAGTCGTTCAATCATGGAAAGATCTATTGCTCCTCTGTTACAGCTAGACTTGTAAATATGAACATTGGGATTCCATATGATAAATTACATATTTTGCCTCTGAACCAAAAGGTTGAAATAGCTGGTATTGATGTGACTTGCTTGGATGCCAACCACTGTCCAGGTTCCATAATCATACTCTTTCAACCTCCGAATGGTAAGGCGGTCCTCCACACNGGTGATTTTCGTTATAGTGAACAAATGACAAACAATCCTTTCCTGCGGATGTGTCCTATTCATACTTTAATTCTTGATACAACATACTGCAACCCACAGTATGATTTTCCAAAACAAGAGGCTGTAATACAGTTTGTTATTGATGCCATTCAAGCAGAAGCTTTTAATCCGAAGACTCTTTTTCTGATTGGTAGCTATACTATTGGAAAAGAAAGGCTATTCTTGGAGGTTGCTCGTTCGCTTCGTAAGAAGGTTTACGTGACTGCAGCAAAGCTTCGTCTTTTAAAATGCTTGGAATTTAAGGAGGAGGATATGCAGTGGTTTACTTTAAATGAACACGAAAGCAACATTCATGTTGCCCCTATGTGGACACTCGCAAGCTTTAAAAGATTGAAGCACTTGTCAAGTCAATATACGGGTCGATTCAGTCTTATAGTAGCTTTCTCTCCTACTGGTTGGACATTTGGCAAAGGTAAAAAGAAGTCTCCTGGAAGAAGGTGGCAGCAGGGTACTATTATAAGGTATGAGGTTCCTTACAGCGAGCATTGCAGCTTTNCAGAACTCAGAGAGTTTGTAAAACTTATATCTCCTGATAACATTATACCAAGCGTGAATAATGATGGACCAGAATCTGCCGATGCAATGGTTTCTCTCATGTTATCCAGCGTCCAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00385	88844	94680	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0005515 protein binding

GO:0046872 metal ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000385s00019801.1	PF00536.25	SAM_1	196	233	3.20E-09
Glyur000385s00019801.1	PF12706.2	Lactamase_B_2	350	505	1.60E-12
Glyur000385s00019801.1	PF07522.9	DRMBL	545	649	6.40E-26

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.967
SRR1783600	control	1.894
SRR1783602	moderate drought stress	1.170
SRR1811619	moderate drought stress	1.154

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.878
DRR006520	Root Summer glycyrrhizin high producing strain	1.637
DRR006521	Root Winter glycyrrhizin high producing strain	0.055
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	2.631
DRR006524	Root Summer glycyrrhizin low producing strain	2.326
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.185
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.108

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	4.383
SRR2868004	Drought Stress (root)	1.942
SRR2967015	Control (root)	2.162

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.565
SRR9715740	Leaf	0.017
SRR9715741	Leaf	0.256
SRR9715739	Root	0.216
SRR9715742	Root	0.504
SRR9715743	Root	0.342

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.291
SRR8749028	MeJA induced 9h	2.541
SRR8749029	MeJA induced 9h	1.794
SRR8749030	Uninduced	0.104
SRR8749031	Uninduced	0.119
SRR8749032	Uninduced	0.196

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.290
SRR8400027	Control - Root	2.367