Gene detail

Gene detail information of Glyur000385s00019794.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G10720.1	0	histidine kinase 5
NR	XP_007136919.1	0	hypothetical protein PHAVU_009G084900g [Phaseolus vulgaris]
COG	YP_003797559.1	2.00E-35	putative sensor histidine kinase [Candidatus Nitrospira defluvii]
Swissprot	tr\|Q3S4A7\|AHK5_ARATH	0	Histidine kinase 5
trEMBL	tr\|V7AWB7\|V7AWB7_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW08913.1}

Sequence

Transcript Sequence

>Glyur000385s00019794.1
ATGGAGAAAGACTGNGTTGAGGATATGGACATTGAAGTTCTCCCTTCAATGTGGCCAGAAGATATTGGAACCGATGTTGGGAAGCAGTTCAATATAGAGAAGCCAGGAAGGGACCAAGACATGNTAGAGGAAGTTACAATCATAGAGGAACCAACTATAGCTGATTTCAAGCGTCTCATGGAGCTAACAAACTTCACAGAAAAGGGGTCTTCTCAGTTAGCATACCTCATGAAACACTGGGAGTATAAGCAGGCCAATGTTGTGCGTCTTCTGAGAGAAGAACTTGACAACCTTAGCAGACAAAGGCAAGATGTTGAGCTCAGGAAGTTGGAGATATTGGAAGAGCATCGATTCGAGGAAGAAAGATATGGCGGTGACAAGCGACCGGTTTCTATATTAGATGATCTTTATGATCTGTGGCAAGATGTACCTTGCAGGAGGAAGAGTGATGTGGTGGTTCAGAACAAGAGAATTGAAATTGATGCTGATGAGTATGATACTGTTGTATATTGGAAACAGCGAGCACTGCACTTGGAGAAGCTTCTGGAGGCAAGTATCCAGAGAGAACAGTTACTTGAAGAGAAGTTGCAAGAAAGTATAAAGAGCATTGAAAGGCAGTCCTCACCTGTGGAAGAACTTTCTCAGATCCTGAAGAGGGCTGATAATTTCTTACATTTTATACTCCAAAATGCACCTGTTGTTATTGGCCATCAGGACAAAGAGTTGCGCTATCGCTTTATCTATAATCATTTTCCAAGTTTACAAGAGGAGGACATCATAGGAAAAACTGATGTTGAAATATTCACTGGAGCTGGTGTTAAGGAATCTCAAGAGTTTAAGAAAGAAGTCTTGGAAAAAGGGTTGCCTGCAAAAAGGGAAATCACTTTTGAGACAGAACTCTTTGGATCAAAGACATTCTTGATATATGTAGAACCTGTCTTCAGCAAGGCAGGGGAAACACTTGGAATAAATTACATGGGGATGGATGTAACGGATCAGGTGAGGAAAAGAGAAAGGATGGCAAAGATTAGGGAAGAGATTGCTGTTCAGAAAGCCAAGGAAACAGAACTGAATAAAACCATTCACATTACAGAGGAAACAATGAGAGCTAAACAAATGCTGGCAACAATGTCTCATGAGATAAGATCCCCACTTTCTGGGGTTGTTAGCATGGCTGAAATCCTTTCTACCACAAAGCTTGATAGGGAGCAAAGACAGCTCTTGGATGTCATGCTATCATCTGGAGATTTGGTTCTTCAACTCATAAATGACATACTTGATCTTTCCAAGGTTGAGTCAGGAGTTATGAAGTTGGAAGCTACCAAATTCAGGCCAAGAGAGGTAGTAAAGCATGTACTCCAGACAGCTGCAGCATCATTGCAGAAAATATTAACCTTAGAAGGACATGTGGCAGATGATGTACCTATCGAGGTCGTTGGTGATGTTTTAAGGATTCGGCAAATACTCACAAATTTAATCAGCAATGCTATCAAGTTCACTCAAGAAGGCAAAGTTGGGATAAACCTTTATGTTGTGCCAGAGCCAACCTTNACAGAAGCTGAAGGCATCCAAAAGATTACTTCAGACCAATCAACTATATCAGTGAATGCAGTGACAGAAGAAAAATATCTCTCAACACCTCAAAATGGCAGTGATCAAAATCTTGTTGATGGTGAAAAGCATGATGACCATGCCAACCAAAACCATGCATTTAATGATGAATGTAGATCCCCGGTTAAAAGTGAATGCTCAATGAACGGAGACACAGAGGAGCAACATCATTCAACTGAAACAACAGTGTGGATACGTTGTGATGTATATGATACAGGCATTGGAATACCAGTGTCTAGCAAAGAACACCATGGTTCCACCTTCACCTTCATACTCCCATACAAGGTCTCAATCGCTTGTGATAATTCTGACTACTCAGATGAGCTCTCTGACATGGAGCACAATGATGCTGCTTCTGATGATACAACAGAAGGTTTCTTCCAATTCCAACCACGCACTCTTGGCTCTCTCTTCTCCTCTAATGGATCAAGCAGGAACCAGAAGTTATTGTCACTGCCACACAAAGTTGGGTACACAAGCTCACATGACATCACCACATCAAAAGGGACATGTTCAATTGATGATGCATCATCTTCAGTGGTTGATGCTTCAGAGCTATCTGAATCAGCTAGTTCATCTGGTCAGTGTCACAGCCCAGAAACAAAGAACAAATGTTTGGTTCAGCATCCATATAATGCTCATGCATGGTCCCAGAATGGTAGTGTAGATTCTTCTCAGCATAGGGTGGCAAATAGAGAAATTGTTGTAGCAACCACTTCAATTGAACCCCACCAAACATGTCAGGATCAAGGGAAGGCAAACACAACTACTACACAACGTGTTACTAGCAGCAATAAATCAGAAGTAACAACCAAATCCACATCATCAAAGCCTAAGATCCTTCTTGTTGAAGATAACAAGATTAATGTCATGGTGACACAATCCATGATGAAGCAGTTAGGTCATAACATAGATGTAGTAAATAATGGGGTAGAAGCAGTACATGCAGTTCAGCGCCGTGCTTATGACCTGGTTCTGATGGATGTCTGCATGCCAGTTATGAATGGTCTTCAAGCAACAAAACTGATTCGGTCTTTTGAAGAGACAGGGAATTGGGATTCTGCAAGACATGCTGGAATTGAGCAAAGTCTACCAGATCAAGATTATGAATGTTCTGTTCCATCTACAAAGAGGATCCCCATTATCGCGATGACAGCAAATGCTTTGTCAGAGAGTGCTGAAGAGTGCTTTGCAAATGGTATGGACTCCTTTGTGTCAAAACCTGTGACTTTCCAGAAAATGAAAGAGTGTCTTGAACAATACCTGAGGTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00385	23125	28188	-

Gene family

Gene family	subfamily
Transcription Factors Family	Orphans

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0000160 phosphorelay signal transduction system

GO:0007165 signal transduction

cellular_component
GO:0016020 membrane

molecular_function

GO:0000155 phosphorelay sensor kinase activity

GO:0004871 signal transducer activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000385s00019794.1	PF00512.20	HisKA	371	434	6.50E-18
Glyur000385s00019794.1	PF02518.21	HATPase_c	480	623	3.00E-07
Glyur000385s00019794.1	PF00072.19	Response_reg	817	885	2.30E-13

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.272
SRR1783600	control	0.265
SRR1783602	moderate drought stress	0.177
SRR1811619	moderate drought stress	0.140

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.188
DRR006520	Root Summer glycyrrhizin high producing strain	0.186
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.222
DRR006524	Root Summer glycyrrhizin low producing strain	0.191
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.129
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.152

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.800
SRR2868004	Drought Stress (root)	1.697
SRR2967015	Control (root)	1.586

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.070
SRR9715740	Leaf	0.022
SRR9715741	Leaf	0.045
SRR9715739	Root	0.044
SRR9715742	Root	0.228
SRR9715743	Root	0.244

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	5.214
SRR8749028	MeJA induced 9h	7.580
SRR8749029	MeJA induced 9h	4.470
SRR8749030	Uninduced	5.555
SRR8749031	Uninduced	1.262
SRR8749032	Uninduced	1.176

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.726
SRR8400027	Control - Root	1.361