Gene detail

Gene detail information of Glyur000385s00019792

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G29120.1	0	glutamate receptor 2.7
NR	XP_003603256.1	0	Glutamate receptor 2.8 [Medicago truncatula]
COG	YP_007242875.1	4.00E-16	amino acid ABC transporter substrate-binding protein/signal transduction system [Thioflavicoccus mobilis 8321]
Swissprot	tr\|Q8LGN0\|GLR27_ARATH	0	Glutamate receptor 2.7 (Precursor)
trEMBL	tr\|G7J966\|G7J966_MEDTR	0	Glutamate receptor 3.2 {ECO:0000313\|EMBL:AES73507.1}

Sequence

Transcript Sequence

>Glyur000385s00019792.1
TGCTTAGCTAGTTAGTTAGTTACGTAAATATTCAAGGTCGACCAAGATGGCGGTGAAGAAATATCCCNATATTAACTTTGTTTACTCTCTGATCTTCATCGTTACTTGTTGGTCTCTAAATTATCGCTTCAGTACTGGCATGGCACAGCCACAGAGAAACGAGAGTACAGTAGTAGTTAAAGTTGGAGCGGTAATTGATGTTAGCGGAACGGTNGGGAAGATAGGGATGAGCTGCATCAACATCTCCCTCTCAGATTTCTATCTCTCTCATTCCCATTACAAAACCAGAATCCAATTGATCGTCAGGGACTCCCACCGCAACGTCGTTTCTGCCGCTGCACAAGCTCTGGATCTCATAAAAAACGAGGAAGTGCAAGCAATCATGGGGCCAGTAACAACAATGGAGGCAAATTTCGTGATCCATCTTGGAGACAAAGCCCACGTGCCCATTGTAACCTTTTCAGCAACAAGCCCATCCCTTGCCTCACTCAACAGTCCATATTTCTTCCAAATCACACAAAACGATTCATCTCAGGTAAAAGCCATCACAGCAATCCTCCAAGCCTTTGGTTGGAAAGAAGTGGTGCCCATTTACGTAGACAACAGTTTCGGTGAAGGACTCATCCCTTGCTTAACCAATGCACTTCAACAAGCCTATATCAGAGTACCCCATCTCTGTGCAGTTCCTCTTTCAGCCACAGATGAAGAAATCACTCTAGAGCTCTATAAATNGATGACTACTATGTCAACTAGAGTCTTTCTTGTACACATGCCACCAACTCTTGGCCCTCGCTTCTTCACTTTAGCAAAAAAGATTGGAATGATGGGTCAAGGTTATGTTTGGATAGTAACCGATGGTATGGCCAATTTGTTCAATTCATTTAACTCCTCAGTCATGGAATCTATGGAAGGAGTAATTGGTGTTAGGCCTTATCTTCCAAGAACAAAAGAGCTCGATGATTTTAAAGTTAGGTGGAAAAGGAAATTCCTACGTGACAATCCAGCACTTGTGGACACGAATTTGAACATTTTTGGAACATGGGCTTATGATGCTACCACTGCATTAGCAATGGCTGTTGAGAAGGTTGGAGCCACCAAATTTGGCTACTACAACAACACATCATCAAGCAGCATGCTTGATCTTGAATCGTTTGGTATTGCACAAAATGGTGAGAAATTGCGTGAGGCTTTGTCAAAGACTAGGTTCACGGGCCTTAGTGGTGATTTCAATGTTGTTGATGGGCAGTTACAAGGGTCGATTTTTGAGATAGTTAATGTAATTGGTAACGGGGAAAAGAGGGTAGGATTTTGGACACCCCAGAAGGGTTTGGCTAGAAATTTGGATACAAAAGGCCTAATCTTTAATTATTCTACTTCAAGAAACAATCTTGGGTCCATTCTATGGCCTGGGGATGTGTACTCTGTTCCAAAGGGATGGGAAATTCCCACGAATTATGGGGAGAAGTTGAAGATAGGAGTTCCGGTAAAAAATGGTGATAATTACACTGAATTTGTGAAAATAACACATGACCCTAGTACCAATTCANCAATGGTCACTGGCTTCTGCATTGATGTCTTCAAAGCCGTGCTCGAAGTGTTGCCTTATGCCTTACCATATGAGTTTATTCCATTTGCAAAGCAAAATGGTGAGATGGCNGGAACCTACGATGAATTTGTCAGCCAAGTTTATTATGGGAATTTTGATGCGGTGGTGGGGGATGTAACGATCATTGCAAACAGGTCCAGCTACGTTGATTTCACAATGCCATACACGGAATCTGGTGTGACAATGGTTGTTCCAGTAAAAGATCACAGGAAGAAGAATGCGTGGGCCTTTTTGAAGCCACTGACATGGGATCTTTGGGTAACATCGGCTTGTTTCTTCGTATTCATTGGATTTGTTGTTTGGCTCCTTGAACATCGAATAAACAACGATTTCAGGGGGCCTCCCTCGCATCAGATTGGCACAAGCTTATGGTTTTCCTTCTCAACCATGGTGTATGCCCATAGAGAGAAAGTGATGAGCAACTTGGGTAGATTTGTGGTCACTGTATGGGTTTTTGTGGTTCTAATTCTGGTGCAAAGTTACACAGCTAGCCTCACTTCCCTCTTAACAGTTGAACAGCTACGCCCAGCTATTGCAGACGTCCAACAACTCATAAAATATAGGATGAATGTTGGCTATCTCAAAGGTTCTTTTGTTTATGGAATCTTAAAGGACTTGGGTTTCCAAGATTCTCAGCTCATGACTTATCAATCCTCGGAAGAATGCCACGAGCTTTTCACAAAAGGGAGTGCAAATGGTGGCATTGCTGCTGCGTTTGATGAGGTTCCCTACGTGAGNCACTTTCTTGGAACTTACAGTTGTTCCAAGTATGTCATGATTGAACCNAGATTTAAAACTGGCGGTTTTGGCTATGGAGACAAAATGAGAGCAATTGAGAAAGAATGGTTCAACGAAACTAGTTGTCTAGAGTCAAATACAGAAGTTTCCTCTAATAGTAGTCTTGGCCTTGAAAGCTTCTGGGGTCTGTTTCTCATTGCAGGGATTGCTTCCCTGTTAGCACTCCTAATCTTTGCAATGACATTCCTGTATCAGCACAGACATGTTTGGTTACACTATGATCCAAGTACTTCAATATGGAGACGCCTTGGAATCTTGTTAAGGATATTTGACCAAAGAGACATGGAAAGTCACACATTCAAGAAGTCTGAAATGCAAAGCAAAAGTGAAAGTAGTAGTCCTCATCATGGCTTAGGTGCAGTTGAGGCCTCTCCAACTACACATTGCCCACCTAGTCCATCTAGTCGAACCGAATCAAACTTTTCCTTTTATGGCGATTCTAGTCCAGACCATGGCAGTGATGCTAAACCAAATGGTTATGCAGCTGATTGTCAAGACCGAGAAATGGATGCTGTGCAAATTATTAATCCATAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00385	250	21772	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

cellular_component
GO:0016020 membrane

molecular_function
GO:0004970 ionotropic glutamate receptor activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000385s00019792.1	PF01094.23	ANF_receptor	66	410	4.50E-58
Glyur000385s00019792.1	PF00497.15	SBP_bac_3	503	780	3.80E-11
Glyur000385s00019792.1	PF00060.21	Lig_chan	603	836	3.30E-37

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.372
SRR1783600	control	0.371
SRR1783602	moderate drought stress	0.285
SRR1811619	moderate drought stress	0.297

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.353
DRR006520	Root Summer glycyrrhizin high producing strain	0.301
DRR006521	Root Winter glycyrrhizin high producing strain	0.038
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.112
DRR006524	Root Summer glycyrrhizin low producing strain	0.059
DRR006525	Leaf Summer glycyrrhizin high producing strain	10.414
DRR006526	Leaf Summer glycyrrhizin high producing strain	10.191

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.510
SRR2868004	Drought Stress (root)	1.922
SRR2967015	Control (root)	1.712

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	6.256
SRR9715740	Leaf	3.582
SRR9715741	Leaf	7.410
SRR9715739	Root	0.000
SRR9715742	Root	0.294
SRR9715743	Root	0.206

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.380
SRR8749028	MeJA induced 9h	0.477
SRR8749029	MeJA induced 9h	0.334
SRR8749030	Uninduced	0.755
SRR8749031	Uninduced	0.109
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.431
SRR8400027	Control - Root	0.812