Gene detail information of Glyur000384s00022287 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G27930.1 | 9.00E-99 | Protein of unknown function (DUF579) |
| NR | XP_004502290.1 | 2.51E-176 | PREDICTED: glucuronoxylan 4-O-methyltransferase 1-like [Cicer arietinum] |
| COG | YP_005070644.1 | 5.00E-33 | TPR domain protein [Arthrospira platensis NIES-39] |
| Swissprot | tr|Q9T0F7|GXM2_ARATH | 2.00E-65 | Glucuronoxylan 4-O-methyltransferase 2 |
| trEMBL | tr|K7MP83|K7MP83_SOYBN | 1.00E-166 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA18G00940.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00384 | 136712 | 137569 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000384s00022287.1 | PF04669.8 | Polysacc_synt_4 | 82 | 269 | 2.70E-68 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 7.235 |
| SRR1783600 | control | 7.286 |
| SRR1783602 | moderate drought stress | 8.838 |
| SRR1811619 | moderate drought stress | 9.460 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 10.212 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 10.101 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 14.754 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 14.111 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 8.016 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 8.741 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.978 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.246 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 18.802 |
| SRR2868004 | Drought Stress (root) | 20.527 |
| SRR2967015 | Control (root) | 21.579 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 6.442 |
| SRR9715740 | Leaf | 6.020 |
| SRR9715741 | Leaf | 3.046 |
| SRR9715739 | Root | 26.929 |
| SRR9715742 | Root | 20.390 |
| SRR9715743 | Root | 20.237 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.557 |
| SRR8749028 | MeJA induced 9h | 0.841 |
| SRR8749029 | MeJA induced 9h | 1.840 |
| SRR8749030 | Uninduced | 1.415 |
| SRR8749031 | Uninduced | 0.469 |
| SRR8749032 | Uninduced | 2.489 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 29.428 |
| SRR8400027 | Control - Root | 51.959 |