Gene detail

Gene detail information of Glyur000384s00022277.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G27320.1	0	histidine kinase 3
NR	AES72013.2	0	cytokinin receptor histidine kinase [Medicago truncatula]
COG	YP_008089003.1	2.00E-77	PAS domain S-box [Chthonomonas calidirosea T49]
Swissprot	tr\|Q9C5U1\|AHK3_ARATH	0	Histidine kinase 3
trEMBL	tr\|G7JBF8\|G7JBF8_MEDTR	0	Cytokinin receptor histidine kinase {ECO:0000313\|EMBL:AES72013.2}

Sequence

Transcript Sequence

>Glyur000384s00022277.1
CATTTTCTAAGTTTATCCTCAATCCTTTTTGTGTGTAATTAGTATTTACTCTTCTTTTTCTATAAAAAAAAAAGTATTTACTCTTCTTCTTCTCTGCAAAAAGCTCTTTAACCTCGAACACTCCCTTTGTTGTTCTCTTGTTTGGTTTTGGAAATTTGAGGAACACTGCAAGCTGGGTTGGTTCATTGTGTAATTAAAANCGAATCTTTTGCAGGCCCCTCCTTTTTGTTCTACTTCTTGGGTTGTTGGTAGCTGGTGGCTGACAAGATAACAATAAGTATCAATCTATGTTTGGAATTAGAAACTCAAGACTGATTCTTTGATTCTTTTGAAGGCGTGTGAATTTCATATATATTATCCTGGTGTTGTAGCCATTCTGAATTTGAAGCTATTGTTTGGTTGGATAGGAATAGGATAGAAATAGCATCTTGTTGTCAAGGTCATGTCTCATGTTCCTCTTCTTTTCAACCCTGAATGAACTCTAGTTTGTTTTTCAAGAATTGAGAGGTGGTTAGCATTTTCTCTCTCTTCATTTATTCATTTATTGAGTTTCCATCCCTCACAAGTTTAGAACTTCTTAGTGAATAATAAGCTTTAGCGTTTGTGGGGTGGGGGGGTATTCTGTGGATTTGACAGTGGTTTCTCTTTTCTCACCTGCCTTGTCTTGTCTACTTGGAATTGGCTACAAGTCATACCACCCACTACCTCTTTGGAACTGTTCCTAATTAACTTGTGTTGGTTACTGTCTTGGATGAGTTTGCTCCATGTAATTGGGTTTGGTCTAAAGGTGGGGCATCTAATTTTGGTGCTATGTTGCTGGGTTGTATCAGTCATTTACATCAACTGGTTCACTACTACTACTAGTGGTGGAGGAATTGTTGTGGACAACACCAAGATGGGTTTTCTGGGAGATGGTGGTGCTGGCAAGATGTGGCTCAAATGGTGGGAGAAGATCTTGGGAAACACATGTAGAATCCACCAACACTACTACCAGTGTATTGGGTACAAGAGAGTGAGGAGAACCTTGTGGAGGAAACTGTTGCTGGCATGGGTGCTTGGTTGGTCCATATTATGTCTTTGGATCTTCTGCTGCATGAGCTTACAGGCCACTGAGAAGAGGAAAGACACTCTGGCTAGCATGTGTGATGAAAGGGCTAGGATGCTGCAGGATCAATTTAATGTGAGCATGAACCATATCCAAGCCATGTCCATTCTGATCTCAACCTTCCACCATGCCAAGAACCCCTCTGCCATAGACCAGAGGACTTTTGCCAAGTATACAGAAAGAACTGCTTTTGAGAGGCCCCTTACAAGTGGTGTTGCATATGCTGTGAGGGTGCTCCATTCTGAAAGGGAACAGTTTGAGAAGCAACAAGGGTGGACTATTAAGAGGATGGACACACTGGAGCAGAACCCGGTTCATAAGAATGACTATGTCCCAGAGGCATTGGAGCCATCCCCAATTCAGCCAGAATATGCTCCTGTCATCTTTGCACAGGATACAATCTCACATGTCATATCTATTGATNTGCTTTCTGGGAAGGAAGACCGTGAAAATGTGTTACGTGCAAGAGAATCAGGCAAAGGGGTTTTAACTGCTCCCTTNAGGCTGTTAAAAACAAATCGTCTAGGGGTTATCCTCACCTTTGCTGTCTACAAGAGAGATCTTCCATCAAATGCAACCCCAAATGAAAGGGTTCAAGCAACTGATGGGTATCTTGGTGGGGTATTTGAGATTGAGTCATTGGTGGAGAAACTGCTTCAGCAACTTGCTAGCAAGCAAAGCGTAATTGTTAATGTGTATGATACAACAAATCAAACCCAACCAATTCCCATGTATGGTTCAAATGTATCAGGTGATGGGTTTTATCATGTGAGCACTCTTAACTTTGGAGATCCTTTCAGGAAGCATGAGATGCACTGCAGGTTCAAACAGAAACCACCGTGGCCATGGTTGGCAATAACTACATCAATTGGCATCCTTGTTATTGCACTCCTTGTTGGACATATTTTTCATGCAACTGTGAATCGGATTGCGAAAGTAGAGGACGATTACCGAGAGATGATGGAGCTTAAAAAACGAGCTGAGGCAGCTGATGTTGCAAAATCCCAGTTCCTTGCTACTGTCTCCCACGAGATCAGAACTCCAATGAATGGTGTTTTAGGGATGTTGAATATGCTTATGGACACTGATCTAGATGTAACCCAACAGGAATATGTCAGAACAGCACAGGGCAGTGGAAAAGCTCTGGTGTCAATTATAAATGAGGTTTTGGACCAGGCAAAGATTGAATCTGGTAAGCTAGAGCTTGAGGCAGTGCTGTTTGACATAAGGGGAATTTTGGATGATGTGTTGTCACTGTTTTCTGAGAAGTCCCAAGGAAAAGGAGTAGAGTTAGCAGTTTATGTCTCGGATCAGTTCACGGACAAAGGGCACATCTTTGTNACCATCCACCTTGTTGAGGAGGTTTTCCATTCAATAGAGGTTGAGACAGAATCCACTTCAAGAGACACAGAAGACACNTTAAGTGGTTACCCGGTCGCTGATGGTCGCCGGAGCTGGGAAGGATTCCGGGCTTTCAGCCATGAGGGACCTCTTGGTTCTTTCTCATCCTCCTCCAATGATCTCATCAACCTGATTGTATCAGTTGAGGACACAGGTGAAGGTATCCCTCTAGAATCTCAGTCCAAGATCTTCACCCCATTCATGCAGGTAGGTCCATCCATCTCAAGGAAACATGGGGGAACTGGTATTGGTCTAAGCATTAGCAAGTGTTTGGTTGGTCTCATGAATGGGGAAATTGGGTTTGTGAGTGAACCCAAGATTGGTAGCACTTTCACATTCACTGCAGTCTTCACCAATGCATGCCCCAATTCAAATGAGCTCAAAAGTCAGCAAATCAACAACCAACCTCATCCTGCATCCTCAGAATTTAAGGGCATGGCTGCACTAGTTGTTGACCCGAGACCCGTTCGAGCTAAAGTGTCAAGATATCACATCCAAAGGCTTGGCATTCATGTTGAATTGGTTTCAGAATTGAACCAAGGCTTGTCCACCATAAGCAATGGGAATGTAGTTATTAACATGGTCCTCATTGAACAAGAGGTGTGGGATAGAGACTCAGGCATTTCNTCTCACTTTGTTAATAACATTAGGAAAGTTGATTGTGGGGTTCCTCCAAAGCTGTTCATTCTTGTTAATTCTAGTAGTTCTTTTAGAGCAAGTTCTGTGACACCACTAGGTGTTCATGATCCAACAGTCATCACAAAACCTTTGAGAGCAAGTATGCTNGCTGCTTCACTACAAAGAGCCATGGGTGTTGGGAACAAAGGGAACAATCCTCGGAATGGGGAACATCAGAGTTTGTCTCTCCACCATCTTCTTTTTGGGAGAAAGATTCTGATTGTGGATGACAATAGTGTGAACCGCACAGTAGCAGCTGGTGCTTTGAAGAAATATGGAGCTGATGTGGTTTGTGTAAGCAGTGGGAAAGATGCCATCTCTTTGCTGAAGCCACCCCATCAGTTTGATGCATGTTTCATGGATATTCAAATGCCAGAAATGGATGGTTTTGAAGCCACAAGAAGAATTCGGGAGATTGAGCAAAGTGTGAACAGAGAAGTGTTTGTTGAGAACAATTCAAACTGGCATTTGCCCATTTTGGCTATGACTGCAGACGTGATCCAAGCTACACATGAAGAATGCCTGAAGTGTGGGATGGATGGATATGTCTCAAAACCTTTTGAAGCTGAGCAACTTTATAGAGAGGTTTCACGGTTTTTCCAATCATCGTGAAAAAAAAAAAATGCAATGTTGATCTAAACCAGATAATGGAATGGAGGCATCAGCGTCTGTTCACCGGGTCCCTGATGAGTATATATAGGTTCAGAAATCTCCTCAGCTCAGAGGAGTGTATATAGGAGCCAAGTTTTACTGGTTGGAATTGAGTCTTCATTGGTTTTGACTTGTCGTGAGGGTATCAAAACTCATGATTCCTTCCATGTAAAGTCACTCTATTCCATGGTAACTCCCAATTGGAAGAGACTGAGGGAGGAATTAGAAGACCTGGGGTGTATCATAATTTAATTTAATAGGTTGTAGTGTCTCATACTCTTCCGCATGTAACAACGTTACTCAACAGTACTCTAATAACCTCACGTTGCTGCGTGTGTTGATGTATAAAAGATTGATTAGATTAGATGAGAGAAAAGGAAATTAGCTTCTTGTTGNGGTGACAAAGGTGTCGAAGTGCATTATACACCATATTGAATTACAATGGCCACNTCATCAGCTTCGGTTCCTTTTGTTCCTAATTGACAGTGCCAGATTTTGGCTTTCAAACATGTA

Protein Sequence

>Glyur000384s00022277.1
MSLLHVIGFGLKVGHLILVLCCWVVSVIYINWFTTTTSGGGIVVDNTKMGFLGDGGAGKMWLKWWEKILGNTCRIHQHYYQCIGYKRVRRTLWRKLLLAWVLGWSILCLWIFCCMSLQATEKRKDTLASMCDERARMLQDQFNVSMNHIQAMSILISTFHHAKNPSAIDQRTFAKYTERTAFERPLTSGVAYAVRVLHSEREQFEKQQGWTIKRMDTLEQNPVHKNDYVPEALEPSPIQPEYAPVIFAQDTISHVISIDXLSGKEDRENVLRARESGKGVLTAPXRLLKTNRLGVILTFAVYKRDLPSNATPNERVQATDGYLGGVFEIESLVEKLLQQLASKQSVIVNVYDTTNQTQPIPMYGSNVSGDGFYHVSTLNFGDPFRKHEMHCRFKQKPPWPWLAITTSIGILVIALLVGHIFHATVNRIAKVEDDYREMMELKKRAEAADVAKSQFLATVSHEIRTPMNGVLGMLNMLMDTDLDVTQQEYVRTAQGSGKALVSIINEVLDQAKIESGKLELEAVLFDIRGILDDVLSLFSEKSQGKGVELAVYVSDQFTDKGHIFVTIHLVEEVFHSIEVETESTSRDTEDTLSGYPVADGRRSWEGFRAFSHEGPLGSFSSSSNDLINLIVSVEDTGEGIPLESQSKIFTPFMQVGPSISRKHGGTGIGLSISKCLVGLMNGEIGFVSEPKIGSTFTFTAVFTNACPNSNELKSQQINNQPHPASSEFKGMAALVVDPRPVRAKVSRYHIQRLGIHVELVSELNQGLSTISNGNVVINMVLIEQEVWDRDSGISSHFVNNIRKVDCGVPPKLFILVNSSSSFRASSVTPLGVHDPTVITKPLRASMLAASLQRAMGVGNKGNNPRNGEHQSLSLHHLLFGRKILIVDDNSVNRTVAAGALKKYGADVVCVSSGKDAISLLKPPHQFDACFMDIQMPEMDGFEATRRIREIEQSVNREVFVENNSNWHLPILAMTADVIQATHEECLKCGMDGYVSKPFEAEQLYREVSRFFQSS

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00384	47222	54281	-

Gene family

Gene family	subfamily
Transcription Factors Family	Orphans

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K14489	AHK2_3_4	EC:2.7.13.3	Plant hormone signal transduction	map04075

Gene Ontology

--

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000384s00022277.1	PF03924.8	CHASE	165	365	1.90E-42
Glyur000384s00022277.1	PF00512.20	HisKA	451	516	1.50E-17
Glyur000384s00022277.1	PF02518.21	HATPase_c	554	701	7.70E-22
Glyur000384s00022277.1	PF00072.19	Response_reg	883	1007	3.20E-22

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	25.363
SRR1783600	control	25.337
SRR1783602	moderate drought stress	27.008
SRR1811619	moderate drought stress	27.066

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	24.947
DRR006520	Root Summer glycyrrhizin high producing strain	24.953
DRR006521	Root Winter glycyrrhizin high producing strain	19.119
DRR006522	Root Winter glycyrrhizin high producing strain	18.897
DRR006523	Root Summer glycyrrhizin low producing strain	30.084
DRR006524	Root Summer glycyrrhizin low producing strain	29.572
DRR006525	Leaf Summer glycyrrhizin high producing strain	12.751
DRR006526	Leaf Summer glycyrrhizin high producing strain	12.686

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	65.294
SRR2868004	Drought Stress (root)	94.664
SRR2967015	Control (root)	94.542

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	28.777
SRR9715740	Leaf	38.136
SRR9715741	Leaf	38.084
SRR9715739	Root	14.099
SRR9715742	Root	49.664
SRR9715743	Root	44.873

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	21.167
SRR8749028	MeJA induced 9h	42.667
SRR8749029	MeJA induced 9h	9.774
SRR8749030	Uninduced	26.381
SRR8749031	Uninduced	8.214
SRR8749032	Uninduced	7.751

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	67.161
SRR8400027	Control - Root	60.139