Gene detail information of Glyur000383s00019467 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G25530.1 | 0 | Transmembrane amino acid transporter family protein |
| NR | AES62039.2 | 0 | transmembrane amino acid transporter family protein [Medicago truncatula] |
| Swissprot | tr|Q9C6M2|LHTL6_ARATH | 0 | Lysine histidine transporter-like 6 |
| trEMBL | tr|G7I458|G7I458_MEDTR | 0 | Transmembrane amino acid transporter family protein {ECO:0000313|EMBL:AES62039.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00383 | 162279 | 165714 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000383s00019467.1 | PF01490.13 | Aa_trans | 27 | 422 | 3.30E-100 |
| Glyur000383s00019467.2 | PF01490.13 | Aa_trans | 27 | 422 | 3.30E-100 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 11.051 |
| SRR1783600 | control | 10.991 |
| SRR1783602 | moderate drought stress | 5.847 |
| SRR1811619 | moderate drought stress | 5.995 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 41.339 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 42.053 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.277 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.269 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 17.368 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 16.874 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.466 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.339 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 28.148 |
| SRR2868004 | Drought Stress (root) | 44.069 |
| SRR2967015 | Control (root) | 20.538 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.709 |
| SRR9715740 | Leaf | 0.124 |
| SRR9715741 | Leaf | 0.391 |
| SRR9715739 | Root | 21.197 |
| SRR9715742 | Root | 32.015 |
| SRR9715743 | Root | 32.735 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.035 |
| SRR8749028 | MeJA induced 9h | 0.097 |
| SRR8749029 | MeJA induced 9h | 0.277 |
| SRR8749030 | Uninduced | 0.050 |
| SRR8749031 | Uninduced | 0.114 |
| SRR8749032 | Uninduced | 0.476 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 23.632 |
| SRR8400027 | Control - Root | 15.019 |