Gene detail

Gene detail information of Glyur000383s00019463

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G20930.1	3.00E-114	RNA-binding (RRM/RBD/RNP motifs) family protein
NR	XP_010088768.1	0	Hippocampus abundant transcript-like protein 1 [Morus notabilis]
COG	YP_004655369.1	6.00E-16	major facilitator superfamily protein [Runella slithyformis DSM 19594]
Swissprot	tr\|Q9SVM8\|RBG2_ARATH	7.00E-18	Glycine-rich RNA-binding protein 2, mitochondrial (Precursor)
trEMBL	tr\|W9QGN7\|W9QGN7_9ROSA	0	Hippocampus abundant transcript-like protein 1 {ECO:0000313\|EMBL:EXB36951.1}

Sequence

Transcript Sequence

>Glyur000383s00019463.1
ATGTACAACGTTTGTTTTGAATCTTTTGATGCAAAGACAAAGATGTCGACGTGGTGGAGTGGGTTCAGAGAGCTGAGGCCTTTATTTCACTTGCTGCTCCCTCTCAGCATCCATTGGATTGCTGAGGAGATGACAGTTTCTGTTCTCGTTGATGTCATAACCGCTGCTTTGTGCCCCGGACACTCTACTTGCTCCAAAGCCATTTACATCAATGGCCTTCAACAAACGGTTGTTGGAGTTTTCAAGATGGTGGTACTTCCACTACTGGGTCAGCTTTCAGATGAGCATGGCCGTAAACCTTTACTCCTTGTTACCATGTCTACCACCATATTTTCTTTTGCTTTACTTGCCTGGAATCAGTCTGAGGAATTTGTATATGCCTACTATGTGGTTCGCACAATTTCGTACATAATCAGTCAAGGNAGTATTTTCTGCATTTCTGTTGCATATGTGGCAGATGTTGTCAATGAAAGCAAAAGGGCAGCAGTATTTAGTTGGATCACTGGTCTCTTCTCTGCTTCACATGTTCTGGGGAACGTGCTGGCTCGACTTCTTCCTGAAAAGTACATCTTTCTGGTTTCAATAGCACTATTGATCTTTGGTCCTGTTTATATGACATTCTTCCTAGTTGAAACGGTGACACCGGCTCCGAGGAAGAACCGAGAGTCAGGTTGCTGTGNTAAAGTTGGTAATGTTCTCCACCAAAGATACAAATCTATGAGGAATGCCGCGGAGATAGTAATTTTCAGTCCCACATTAAGAGGCATGGCTCTTGTCTCTTTCTTTTATGAGTTGGGAATGTCTGGCATAAGCAGCGTTTTGCTGTACTATTTGAAAGCTGTTTTTGGTTTTAACAAAAATCAGTTCTCAGAACTTCTGATGATGGTGGGAATNGGTTCAATCTTTTCTCAGGCTTGGCTCTATGGATTAGCATGGGCACCTTGGGTGCCATACTTAAGTGCATCATTTGGTATCATCTATGTCCTTGTGAAACCTTCCACCTACGCTATTATTTCAAAAGCATCAAGCTCAACCAATCAGGGAAAAGCACAAACTTTTATTGCTGGGGCACAATCTATATCTGATTTACTGTCACCTCTTGCTATGAGTCCTTTGACTTCNTGGTTTTTATCTAGCAATGCTCCCTTTGAATGCAAAGGTTTTAGCATTATATGTGCATCCATATGCATAGATTGTGACACAAACATGGAAGTTCTGTCTGCGCCTGTTACATTCAGCAAATTTCAAACCTTTCCCTCTGTGAAACCAAAGAGAAACNAAATTCAGGAACTTTCAATAAACACAAGACTACCCAACAAAAAGAATCATTCTAATCTTTCTACTTCTTCTTCCATTTCATGTAATTGGTCCTTTACTAGGATATCAGCAACAACACACCCTTCCTTCACTCCTTCCACCACAAAGAACCGCCATTGGATGGTGCTCATGGACAAGCCTCCTCATGGTGTCAATTCCAAGGCACAGGTCATTGATTATTATGTGAAGACTCTACAAACAGTTCTGGGCAGTGAGAAAGATGCTCAAATGTGTCTATATGATGCTTCCTGGGATGCACACTTCGGTTTCTGTTGTGACATTGATGAAGAAATATCCTCCCAGCTGGCCAGTTTACCTGGGGTCTTATCGGTTAGACCTGATCCAGATTTCAGCTCTTTGAAAAAGGACTATAGTTCAACAAGTCGCCAGGCAGGTCAACCGTGGAGTTTACAAACTAGAACCAATATGTTGTTCCCTGCAGGAAATTCAAAGCATTGGCTTGTTAGAATGGATAAACCTGGCATTGGTGTTGTTACCAAAGCTCAGATTGTTGATTATTATGCTCAAATTTTGACCAAGGTCATGGGAAATGAGAAGGATGCACAAATGTGTATATATCATGTTTCCTGGAAAACTAATTTCGGCTTTTGTTGTGAACTTGATGAGGACTGTGCACAAGACCTAGCTGGTGTGCCTGGTGTCTTATCAGTTCAGCCAGATGACAATTTTGAGTCTGAAAATAAGGATTATGAAGGTAGTAACTTGGAAAATAGTTTGAATGTGCCAAACTCTTCTGAAGCAAGTCAGGAAGCTACCTTGAAAACAAAGAAACTTTTTGTGACAGGGCTATCATTTTATACATCTGAGAAAACCTTACGTGCTGCATTTGAAGGTTTTGGTGAACTTGTTGAAGTTAAAGTNATCATGGATAAAATTTCAAAAAGGTCCAAGGGTTATGCATTTATTGAATACACCACAGAGGAGGCTGCAAGTGCAGCACTCANAGAGATGAATGGCAAGATTATTAATGGCTGGATGATAGTGGTAGATGTTGCCAAGCCTCTCCCACCAAGATACAACCAGGGCCGTGCCAGACCATCCATCAGCTTGACAAGAGAAAGAAGTCTGTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00383	132339	139898	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055085 transmembrane transport

cellular_component
GO:0016021 integral component of membrane

molecular_function

GO:0000166 nucleotide binding

GO:0003676 nucleic acid binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000383s00019463.1	PF07690.11	MFS_1	72	317	1.60E-16
Glyur000383s00019463.1	PF00076.17	RRM_1	704	770	1.60E-19

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.192
SRR1783600	control	2.115
SRR1783602	moderate drought stress	2.018
SRR1811619	moderate drought stress	1.975

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.736
DRR006520	Root Summer glycyrrhizin high producing strain	2.841
DRR006521	Root Winter glycyrrhizin high producing strain	4.633
DRR006522	Root Winter glycyrrhizin high producing strain	4.759
DRR006523	Root Summer glycyrrhizin low producing strain	3.085
DRR006524	Root Summer glycyrrhizin low producing strain	2.783
DRR006525	Leaf Summer glycyrrhizin high producing strain	5.025
DRR006526	Leaf Summer glycyrrhizin high producing strain	5.366

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	32.733
SRR2868004	Drought Stress (root)	24.516
SRR2967015	Control (root)	15.335

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.108
SRR9715740	Leaf	5.232
SRR9715741	Leaf	2.931
SRR9715739	Root	0.316
SRR9715742	Root	1.153
SRR9715743	Root	0.982

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.044
SRR8749028	MeJA induced 9h	2.770
SRR8749029	MeJA induced 9h	1.516
SRR8749030	Uninduced	1.571
SRR8749031	Uninduced	1.273
SRR8749032	Uninduced	0.753

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	12.219
SRR8400027	Control - Root	8.203