Gene detail

Gene detail information of Glyur000383s00019459

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G03610.1	9.00E-87	GDSL-like Lipase/Acylhydrolase superfamily protein
NR	XP_003591758.1	1.74E-175	GDSL esterase/lipase [Medicago truncatula]
COG	YP_003889110.1	3.00E-12	G-D-S-L family lipolytic protein [Cyanothece sp. PCC 7822]
Swissprot	tr\|Q9LZS7\|GDL71_ARATH	6.00E-102	GDSL esterase/lipase At5g03610 (Precursor)
trEMBL	tr\|G7I351\|G7I351_MEDTR	7.00E-176	GDSL-like lipase/acylhydrolase {ECO:0000313\|EMBL:AES62009.1}

Sequence

Transcript Sequence

>Glyur000383s00019459.1
ATGGCGAAACAAACTCCACCTGTAATAATCACTCTTGTGATCCCTCTGCTTCTTCTCCTCTTCGTTTTAACAGGAGTGGAAGGGGCTAAGAAGTCATATGGGATATCCAACAAAAACTCTGTAAAGCTGTTTGTTTTCGGGGACTCCTACGTTGACACCGGCAATTTCGTGCACTCGAAATCGTTTAAGCCTCCTTATGGAATCACTTTTCCGGGTAAACCTTCTGGAAGGTTCTGCGACGGTCGCGTTCTCACCGATTACGTTGCTTCCTTTCTGAAAATTCAAACCCCTGCACCGTATAGGTTGAGAAATTCGTCAGACCTACAATATGGAATCAACTTTGCCTACGGAGGAACTGGTGTTTTCCAAACTCTGGTTGATGGCCCAAACATGACCCTCCAAATAGACTCACTCGAACAGCTCATCCAACAAAATATCTATACCCGACCCGACCTTGAATCCTCTGTTGCTCTTGAGATAGAAGCCTTCACTACATCCCTTATCAACCAACTGTCCCTAAATATTCAACGAATTCACCGTTTGGGAATAAATAAAGTAGCAGTTTCGTTATTGGGGCCTATTGGGTGTTTGCCTCAGATAACTCTGGTAACTTTCCATTTGAAGTGTGTTGACATCTTAAACTTGGTCTCCCAAAATCACAACAATAAGCTGATCCAAACTGTGCAAGAACTGAACCAGCAAGCAGGGAAATCGGTTTTCGTGACACTAGACCTTTACAATGCGTTCCTCTCCACAATTTCAACGATGCAGAAAAAACATGACGAAAACAAAATACTGATGAATCCATTGCAACCGTGTTGTAAGGGAGAGGGTTTGGAAAACTCTTGTGGACGTGTGGATGATAAAGGGGCAAAGAAATATAGTGTATGTGAGAAACCAGAGCTTTCATTCTTTTGGGACAATGTTCACCCTTCTCAAAATGGTTGGTATGCAGTCTACTCGTTGCTGCAATCTTCTCTGTTTGTATTTGGGGACTCCTACGTTGACTCCGGCAATTTCCTGAACTCACCGTCGTATAAGCCTCCTTATGGAATGACTTTCCCTCGTAAACCTTCTGGAAGGTTCTCCGACGGTCGCGTCCTCACCGACTACATTGCTTCCTTTCTGAAAATCAAATCCCCCACACCATATGCATTGAGAAATTCCACAGAACTACAATATGGTATGAACTTTGCACATGGAGGGACCGGTATTTTCAACACTTTGGTTGATGGACCAAACATGACTGTCCAAATTGACTCATTTGAGAAGTTGATCAAACAAGAACTCTACACCAGACCCGACCTTGAATCCTCAATTGCCCTTGTGAACGCTGCCGGCAACGACTATGCTACATTTGCACTAAAAAATGGCAGCATTCAGGATATGTCGCTCCTCACTGCATCCCTTATCAAGCAAATGTCGTTGAATCTTAAACGCATTCACAGCTTGGGAATAAATAAAGTAGCAGTTGGTTTATTAGAGCCTATGGGGTGTGTGCCTCTGTTAACTGCGATATATTCATATGAGAATTGCGATGAGACATTCAACTCAATCTCCCAAAATCACAGTCAAATGTTGCTCCAAACTGTGCAAGAACTGAACAAGGAAATCGGAAAATCGGTTTTTGTGACACTAGACCTCTACAACTCTTTCCTCTCCACAATTGCAACAATGCAGAAAAGGCATGCTAAAAACTCAACACTGATGAATCCGTTGCAACCATGTTGCATGGGAGAGAGTAGGGATTATTCATGTGGAAGTGTGGATGGGAAAGGAGCAAAGAGATATAGTGTATGCGAGAAACCGGAGCTTTCATTCTTCTGGGAGACAGTTCACCCTTCTCAAAATGGTTGGTTTGCAGTCTACATGACGTTACAATCTTCTCTC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00383	99863	109632	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0016788 hydrolase activity, acting on ester bonds

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000383s00019459.1	PF00657.17	Lipase_GDSL	43	315	2.20E-12
Glyur000383s00019459.1	PF00657.17	Lipase_GDSL	327	618	6.80E-14

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.109
SRR1783600	control	2.132
SRR1783602	moderate drought stress	2.050
SRR1811619	moderate drought stress	2.034

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.229
DRR006520	Root Summer glycyrrhizin high producing strain	0.167
DRR006521	Root Winter glycyrrhizin high producing strain	0.310
DRR006522	Root Winter glycyrrhizin high producing strain	0.303
DRR006523	Root Summer glycyrrhizin low producing strain	0.282
DRR006524	Root Summer glycyrrhizin low producing strain	0.269
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.049
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.020

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	9.746
SRR2868004	Drought Stress (root)	7.320
SRR2967015	Control (root)	4.546

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.343
SRR9715740	Leaf	0.000
SRR9715741	Leaf	0.264
SRR9715739	Root	2.007
SRR9715742	Root	1.473
SRR9715743	Root	1.465

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.106
SRR8749028	MeJA induced 9h	0.146
SRR8749029	MeJA induced 9h	0.148
SRR8749030	Uninduced	1.115
SRR8749031	Uninduced	0.315
SRR8749032	Uninduced	0.180

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	12.398
SRR8400027	Control - Root	12.558