Gene detail

Gene detail information of Glyur000383s00019458

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G66240.1	9.00E-22	homolog of anti-oxidant 1
NR	XP_004496193.1	7.29E-41	PREDICTED: copper transport protein ATOX1-like [Cicer arietinum]
COG	YP_003704212.1	2.00E-06	heavy metal transport/detoxification protein [Truepera radiovictrix DSM 17093]
Swissprot	tr\|Q94BT9\|ATOX1_ARATH	2.00E-35	Copper transport protein ATX1
trEMBL	tr\|G7I348\|G7I348_MEDTR	6.00E-41	Uncharacterized protein {ECO:0000313\|EMBL:AFK35902.1}

Sequence

Transcript Sequence

>Glyur000383s00019458.1
CAATGAAGACGTAATCGCATACGAGCGCGTCATTTTTACGTTGCGTGTAGTACCATCGTGTGTGCTGTGGTCACCCAACCCAACCCAACCCAACCCAACCAACGTTGTTGTCTTTTTCCCCCACACCCACTCTGCAAATTGTAAATTTTCCCCCATATAAAGGACCAAACTCCCTCAAACGCAATCCACATCATATCGGTATCCATTTATTTCCTTCTTATTGACTTTTCCTCTCTTCATTTCTCATCCACCCATAAGTCATAACNATGTCTCAGACTGTTGTCCTCAAAGTTGGTATGTCATGTGAAGGATGTGTTGGAGCAGTGAAGAGGGTTCTGGGAAAATTGGATGGTGTGGAATCATATGACATTGATTTGAAGGAACAGAAAGTGGTAGTGAAAGGAAAGGTGGAGCCAGACACAGTTCTGAAGACCGTTTCCAAAACTGGGAAGCCAACTTCCTTCTGGGAAGCTGGATCACCAGCTGAGAGCACAGTAACTGATGCCTAAAACATTTGGAGAAGTTGCTTTATTTGATGGATTTGTAATAACTATGGAACGTGTCCTCTGTCTGATCTGATGTCTCATAATAAAGCCTGCAGAATGTTACTATTGTATTTTTCAGTTTCACAGCTGTGATACTCTGTATTAATGTGCTTTTTATTGAAAAATTTAACTCCCCTTGAAGTTGTACCTGTTGCTACTGATTTTCTTCTTTCTATCAAACCTATTCCCCACTTCTACCAATTCTTTCAAAATCTAAATTAATCTGTGGACATCCTTAACATAGCAAACACAGTATGATTTTGTTAGGCAGGAGGAACAAAAAGAAGTGAAAAGGAATCTGAAAATCTGGATGAAAATCTAACACATTTTTTATTAAATGTGGTTTTTTTTTTGTAATACAACTAGCAATTGCCTGTCCACGATGTCCATGGCCAAAAAATTCATAAACTAGTTTTTATGTTAACTGTCATTTTCTTCTCAGATTTTATTGTTGGACATAGATTAACTGAGGACAACGTAAATGTAAAGACTCGTGTACTCAAGGCTTTCTCGATTATGAAAAAAAAATAGTTAAAATATTTAATTGTAATACACCACGACAAATA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00383	95233	98441	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0030001 metal ion transport

molecular_function
GO:0046872 metal ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000383s00019458.1	PF00403.21	HMA	6	62	2.80E-18

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	94.771
SRR1783600	control	92.235
SRR1783602	moderate drought stress	58.441
SRR1811619	moderate drought stress	56.391

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	112.406
DRR006520	Root Summer glycyrrhizin high producing strain	110.405
DRR006521	Root Winter glycyrrhizin high producing strain	92.879
DRR006522	Root Winter glycyrrhizin high producing strain	88.087
DRR006523	Root Summer glycyrrhizin low producing strain	145.734
DRR006524	Root Summer glycyrrhizin low producing strain	147.083
DRR006525	Leaf Summer glycyrrhizin high producing strain	127.240
DRR006526	Leaf Summer glycyrrhizin high producing strain	125.772

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	343.337
SRR2868004	Drought Stress (root)	418.368
SRR2967015	Control (root)	333.706

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	247.593
SRR9715740	Leaf	271.543
SRR9715741	Leaf	312.171
SRR9715739	Root	164.760
SRR9715742	Root	171.234
SRR9715743	Root	165.309

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	213.894
SRR8749028	MeJA induced 9h	245.977
SRR8749029	MeJA induced 9h	381.100
SRR8749030	Uninduced	808.031
SRR8749031	Uninduced	1042.399
SRR8749032	Uninduced	685.273

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	191.894
SRR8400027	Control - Root	184.387