Gene detail information of Glyur000383s00019452 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G36360.2 | 0 | Galactose oxidase/kelch repeat superfamily protein |
| NR | KEH43429.1 | 0 | galactose oxidase/kelch repeat protein [Medicago truncatula] |
| COG | YP_006448235.1 | 3.00E-10 | hypothetical protein Desti_3313 [Desulfomonile tiedjei DSM 6799] |
| Swissprot | tr|A8JAM0|CC135_CHLRE | 5.00E-23 | Coiled-coil domain-containing protein lobo homolog (Fragment) |
| trEMBL | tr|A0A072VN65|A0A072VN65_MEDTR | 0 | Galactose oxidase/kelch repeat protein {ECO:0000313|EMBL:KEH43429.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00383 | 44441 | 54320 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000383s00019452.1 | PF13418.1 | Kelch_4 | 19 | 58 | 6.30E-09 |
| Glyur000383s00019452.1 | PF13415.1 | Kelch_3 | 87 | 135 | 8.30E-11 |
| Glyur000383s00019452.1 | PF13415.1 | Kelch_3 | 138 | 185 | 5.80E-09 |
| Glyur000383s00019452.1 | PF13415.1 | Kelch_3 | 189 | 242 | 3.20E-06 |
| Glyur000383s00019452.1 | PF13415.1 | Kelch_3 | 244 | 300 | 1.10E-06 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 9.797 |
| SRR1783600 | control | 9.828 |
| SRR1783602 | moderate drought stress | 10.068 |
| SRR1811619 | moderate drought stress | 10.109 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 11.653 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 11.503 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.727 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.950 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 9.924 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 9.834 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 8.869 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 9.205 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 22.132 |
| SRR2868004 | Drought Stress (root) | 23.166 |
| SRR2967015 | Control (root) | 21.776 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 12.742 |
| SRR9715740 | Leaf | 12.120 |
| SRR9715741 | Leaf | 12.184 |
| SRR9715739 | Root | 2.399 |
| SRR9715742 | Root | 9.192 |
| SRR9715743 | Root | 5.772 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 11.732 |
| SRR8749028 | MeJA induced 9h | 10.986 |
| SRR8749029 | MeJA induced 9h | 7.706 |
| SRR8749030 | Uninduced | 7.239 |
| SRR8749031 | Uninduced | 3.306 |
| SRR8749032 | Uninduced | 4.269 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 20.433 |
| SRR8400027 | Control - Root | 21.180 |