Gene detail

Gene detail information of Glyur000383s00019446.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G03680.1	4.00E-60	Duplicated homeodomain-like superfamily protein
NR	KEH43422.1	0	trihelix transcription factor [Medicago truncatula]
Swissprot	tr\|Q9LZS0\|PTL_ARATH	2.00E-77	Trihelix transcription factor PTL
trEMBL	tr\|A0A072VNQ7\|A0A072VNQ7_MEDTR	0	Trihelix transcription factor {ECO:0000313\|EMBL:KEH43422.1}

Sequence

Transcript Sequence

>Glyur000383s00019446.1
ATGAGTGACCCATATGGGTTACCGGAGGATCTCCGGCGGTTTATATCAGCAAGAAACACTACAAATCTACCTGCAGAGCCACCACTGTGTGTGTATGCTGCTGCTGCTAATTCTTTTCCTCCACCACCCAATAGCTGCTGCTACGACCCCATCAACATGGTTGGGGACGTTTTCTTCCCCCGTGGGGGCTTCACTACTCACTATGCACACCATGATTATTCCTCAAGTGTTAACCCCACAACCAACTCTGCTACTGTTATTGCTGCTGCTACCTCAGATCATGCTGCAGCATCATCATCAATATTCTGTGGCATGGAGAGTAGTATTTCTGCAGAAAAAGGGTGGCTTGGCTTTGATAATTCTGCAGGGAACAACCGGTGGCCTAGACAAGAGACCCTTTCTCTTCTAGAGATCAGATCTCGTCTTGATTCCAAGTTCAGAGAGAATAATCAGAAAGCACCCTTGTGGAATGAAATTTCTAGGATAATGGCTGAGGAATTCGGGTACCAAAGAAGTGGAAAGAAGTGCAAAGAGAAGTTTGAGAATCTGTACAAGTATTACAAGAAGACCAAAGAAGGTAAAGCAAGNAGACAAGATGGGAAGCACTACAGATTCTTCAGACAGCTTGAAGCAATATGTGGAGAACAACCAAACACTCATCATGCCTCAACTTCAGATCATAAGACCCTTCANGCATCTGGAAATACTCAAACTCCAAGCTTTACAATGAACCAAGACAATGTTAATGCTGATCATCATTTCATCAACAACAACAACCTCATAAATCAGAGCCCCAGTTTCTCAAATTCATCTGAATTCGAGACAACATCCTCATCTGAAAACAACAATGATATTGAGGATCTCTCAGCTATGATGAAGCAGTCTTCAAAGCAGAAAGGGTTAAGACAAAGTAGTAGTGATGATGTGAGGGTGAGAAAAAGCAGGTGGAGAGCTAAAGTGGAGGAGATGGTNGATTCCCACATGAGGAAGATCATAGAGACTCAAGATGCTTGGATGGAGAGAATGTTGAGTGTTGTTGAGCAAAGAGAGCAAGAGATGGCATCTAAGGAAGAAGAGAGGAAGAGGAAAGAGTCAATGAGGTTTGACCAACAGGTACATGAACTTTGGGCTAGAGAGAAAGCATGGGTTGAGGCAAGAGATGCTGCATTGATAGAGGTTGTAAGAAAACATGTTGTTGGGGGGATGGAACAGGTTGAAGCATCAATGCCATTAGAAGCAGCACCAAATAATAAGAACAATATTAATGAGTACTACTACCCCTGTGAAAGTACTAGTAGTAGTAGTAGATGGACAGAGATGGAGATTTCAAACTTGATACAGCTGAGGAGTGGGTTTGAACAGAGGCTGAGAGAATGGTTTGTTTGGGGATTTGATAGGAATGCGGGTGAGTGCAAGCAGATATGGGATGAGATCAGCATGTCTCTTAGAAAGACAGTGGAGGAGTGTGCTACAGGAGGGATCGAGCCAAAACAACAAGGCCTGCTCCTTGGTGTTTGGGACTTAAGCTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00383	10578	15777	+

Gene family

Gene family	subfamily
Transcription Factors Family	Trihelix

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000383s00019446.1	PF13837.1	Myb_DNA-bind_4	125	212	3.00E-20

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	31.817
SRR1783600	control	31.860
SRR1783602	moderate drought stress	42.645
SRR1811619	moderate drought stress	43.077

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	50.111
DRR006520	Root Summer glycyrrhizin high producing strain	49.717
DRR006521	Root Winter glycyrrhizin high producing strain	16.749
DRR006522	Root Winter glycyrrhizin high producing strain	15.701
DRR006523	Root Summer glycyrrhizin low producing strain	30.100
DRR006524	Root Summer glycyrrhizin low producing strain	30.192
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.405
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.155

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.450
SRR2868004	Drought Stress (root)	0.461
SRR2967015	Control (root)	0.665

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.980
SRR9715740	Leaf	1.125
SRR9715741	Leaf	1.561
SRR9715739	Root	0.913
SRR9715742	Root	4.489
SRR9715743	Root	4.036

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	22.574
SRR8749028	MeJA induced 9h	9.746
SRR8749029	MeJA induced 9h	4.232
SRR8749030	Uninduced	3.231
SRR8749031	Uninduced	0.976
SRR8749032	Uninduced	0.626

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	4.543
SRR8400027	Control - Root	7.418