Gene detail

Gene detail information of Glyur000382s00020385

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G16820.2	3.00E-80	heat shock factor 3
NR	XP_003607433.1	0	Heat stress transcription factor A-1 [Medicago truncatula]
Swissprot	tr\|Q84T61\|HSFA1_ORYSJ	2.00E-143	Heat stress transcription factor A-1
trEMBL	tr\|G7JSS3\|G7JSS3_MEDTR	0	Uncharacterized protein {ECO:0000313\|EMBL:AFK43715.1}

Sequence

Transcript Sequence

>Glyur000382s00020385.1
AAACCCCCGACCCTTTCCCCGCTTCTCTCTACACTGAAGAAGATTTTTTCTATCTATCCATCTAACTATCTCATTTCACTGTCACTACTGTTACTCTCTTCTTCTTCTTATTTGTGTTTGTGTATCATCATCATCAGAGTTGGGTTGGGTTGGGTTGGGTTGGGTTGGATATGGCGGGAGGGAGCGTGAATAGCGTGGTGGCGCCATTCCTGAGCAAGACTTACGACATGGTGGATGACTCTTCCACCGACAGCATGGTCTCGTGGGGTAAGAACAGCAACACCTTCGTTGTTTGGAATGTCACCGAATTCGCCAAACACATCTTGCCCAAATATTTCAAGCACAACAACTTCTCCAGCTTCGTCAGACAGCTGAATACCTACGTTGGTCCTCTTGGCTTGGTGGTGTTACTGATTGGAGAGGGAACAGAGGGTTTCCGAAAGGTTGACCCAGACCGCTGGGAGTTTGCACATGAAGGATTTCTGAAGGGTCAAAAACAATTGTTGAAGACTATCAATAGGCGGAAATCTTCTCATGCAAATGGTAGTAGTCAACAACCATCTAAGGTGCAGAACTCTCCTGTTGGNGCATGTGTTGAAGTGGGGAAGTTTGGGCTTGAGGAAGAGGTTGAAAGACTGAAAAGGGATAAGAACGTTCTTATGCAGGAACTTGTTAGGTTAAGACAACAACAACAAACCACTGATAACCAATTGCAAAGTGTTGGGCAACGTATGCAGGTAATGGAGCAGCGTCAGCAACAGATGATGTCATTCCTTGCAAAGGCCATGCATAGTCCGAGCTTCTTGGCTCAGTTCGTACAACAGAAGAATGAAAGTAATACTAATAGACACATTACTGGAGGTAAAAAGAGGAGGTTCCACAGGCAGGAAGAAGATAGATTAGCCACCAAGCATGTCCATAATCCTCTTGATGGACGTGTTGTCAAGTACCAGCCTTCNATAAATGAGGCTGCAAAAGCATTACTTCGCCAGTTATCGCAAATGAACAATTCTACAAGGATGGAATCATCCATTAAGAACNCTGATGCATTCTTCATTGATGATGCTCCTTCTGCCATGGCATTAGATAGCAGTAGTTCATCCACCCAGGTTTCTGGCGTAACACTTTCTGAGGTTCCACCTATTTCTGGGCAGTCATGTATGGCAGTAGAATCTCAATTTCCTGTCAGTTGTATGACCAATAGCATATCTGAGGTACAATCTGCACCTGCTGTGTTGACTGACTGTATCAAAGCAGCTGAATTTCCCGAATTAACNGCACATAATTGCCAAAACAATGTTTTGGATTTTGGTAAAGTTCGAGGGATGGGGACTGAAAGCAGCTTCATGAATTCTGATCAAAATTTTGTGGGGTCNAACACTGGGAATGAGGAGATAGACGTGATGTCAACTGTTTTAGATGGGACAGAGTCTTTGAAAGCTGATGCTTTTTCTCCAGATGCAGATGGAATTTCTAAGCTTCCAGGAATCAATGATGAATTCTGGGAANTGTTTTTGAGGCCAAGCCCACTTACCGGAGACACAGACGAAGTTAAATGTACCTCCTTAGGATATGGTTTGACCAAAGACCAGGAATTGTCATTGGAAAAGGAGATTCAACAGGAAAAGATGGATAAGAAACAACATATTGACCATCTTACTCAACAGATGGAACTTCTTGCATCGGAGTCTTAATTGTATATATGTTTCTTACAACTAAAGAGGTTGATGTACTTTGCTGCTGGGCCGATAAAGCCAATCCTACTTCTACAAAGACAACTGATGACAGATATCACCAAACAAATTATTCCCTGTTTTTCTCTTTTTCCTCATCCGTGTATCTGTCCCTTTTCAGTTGTNTTGTTCGTCGTTTGGGGCCAAAAGACCAACTAAAGTTTTATCTAATTTCCTATTTCCTGACTTGTATTTTGGGTTTTGACAATTCTGTGTGCTCTTTCTGACAATGGTTGGTTATCCTTAAGACGAACTGTATATTTTTTCCTATACTTTTCTCCTCCTTCATCTCCTCTTCTGATGTGGGTGTTAATATTTTAGTGAGGTTTAGTTGCATTGTNGAGTTGTTTCCTTCAGCATTATTTAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00382	158536	161940	-

Gene family

Gene family	subfamily
Transcription Factors Family	HSF

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006355 regulation of transcription, DNA-templated

GO:0009408 response to heat

cellular_component
GO:0005634 nucleus

molecular_function

GO:0003700 transcription factor activity, sequence-specific DNA binding

GO:0043565 sequence-specific DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000382s00020385.1	PF00447.12	HSF_DNA-bind	13	121	6.10E-29

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	5.326
SRR1783600	control	5.282
SRR1783602	moderate drought stress	6.891
SRR1811619	moderate drought stress	6.830

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	12.281
DRR006520	Root Summer glycyrrhizin high producing strain	12.304
DRR006521	Root Winter glycyrrhizin high producing strain	27.604
DRR006522	Root Winter glycyrrhizin high producing strain	26.766
DRR006523	Root Summer glycyrrhizin low producing strain	11.545
DRR006524	Root Summer glycyrrhizin low producing strain	11.712
DRR006525	Leaf Summer glycyrrhizin high producing strain	9.459
DRR006526	Leaf Summer glycyrrhizin high producing strain	9.239

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	8.161
SRR2868004	Drought Stress (root)	10.925
SRR2967015	Control (root)	14.245

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.682
SRR9715740	Leaf	5.991
SRR9715741	Leaf	5.212
SRR9715739	Root	2.746
SRR9715742	Root	8.126
SRR9715743	Root	5.823

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	9.057
SRR8749028	MeJA induced 9h	8.116
SRR8749029	MeJA induced 9h	5.065
SRR8749030	Uninduced	8.188
SRR8749031	Uninduced	6.584
SRR8749032	Uninduced	7.794

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	7.958
SRR8400027	Control - Root	6.419