Gene detail

Gene detail information of Glyur000382s00020381.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G16890.1	0	Exostosin family protein
NR	XP_004505598.1	0	PREDICTED: probable glucuronoxylan glucuronosyltransferase F8H-like isoform X1 [Cicer arietinum]
Swissprot	tr\|Q6DBG8\|ARAD1_ARATH	1.00E-75	Probable arabinosyltransferase ARAD1
trEMBL	tr\|G7JSR8\|G7JSR8_MEDTR	0	Exostosin family protein {ECO:0000313\|EMBL:AES89625.1}

Sequence

Transcript Sequence

>Glyur000382s00020381.1
CTTACTTTCAATGTAACGTGCATCACCTTCCTTCACCATCCCACTCACTACTGCTTGGAGGGAAGGAAAAAAAAATGGCAGGAAAGCAGATCCCAAGATCCAAATCGCGAATCCTCCTCTTAGCTCTCTCCCTCCTTGCTCTCTCTCTCCTCATCTTCCTCTCCTCCCTCTCCCCACTCCACACCCCTTCCCCTTCCTCCACCACCACCACCCATTTCCACCTTCCACGTGCCGAAACCTCATTCGTCGCCTCCCTCGAACACTTCCTCACCCAAACTCACTCCGCACCCAATCCCTCTCTCCCCGACGACACTGTCCTCNAACCGCTTACCGAAGACGCCGTTACGAAGCTCGACGACGCCGTTTTCCATTCCGAAACCGATAGGCTCTATTCTGATCCATATTACCCGTTAGGTCTTCCCCTTAGGGTTTACGTCTACGAAATGCCCTCGAAATTCACCTACGATTTGCTCTGGCTCTTTAGGAACACCTACAAGGACACCTCCAATCTCACTTCCAACGGTAGCCCCGTTCACCGTCTCATCGAACAGCACTCTATTGATTACTGGCTTTGGGCTGATCTCATCGCTCCCCAATCGNAAAGGCTGTTGAAAAGCGTCGTCAGGGTTCACCGACAGGAGGATGCTGACTTGTTCTATATACCATTCTTCACCACCATAAGCTTCTTCCTCATGGAGAAACAACAGTGCAAGGCCCTTTATAGGGAAGCTTTGAAGTGGATCACGGATCAACCTGCGTGGAAGCGCTCTGGTGGAAGGGATCACATANTTCCCGTGCATCATCCGTGGTCTTTTAAATCTGTTAGGAGATACGTGAAGAAAGCAATATGGTTGTTGCCGGATATGGATTCCACGGGGAACTGGTACAAGCCGGGACAGGTTTATCTCGAGAAAGACCTCATTCTTCCTTATGTTCCCAATGTTGATTTTTGTGATGCCANATGTTTATCTGAAACAAATCCCAAGAGGAGCAATCTTGTTTTCTTCCGTGGCCGGCTCAAAAGAAATGCGGGTGGAAAAATACGCTCTAAACTTGTAGTTGAATTAAGTGGAGCAGATGGTGTAATTATAGAGGAGGGAACTGCTGGAGACCGGGGAAAAGAAGCAGCTCAAAATGGAATGCGCAAGTCTCTATTTTGCTTAAGCCCTGCCGGCGACACTCCATCCTCTGCTAGATTATTTGATGCTATTGTTAGTGGATGCATTCCAGTTATAATAAGTGATGAGCTGGAGCTTCCTTTCGAAGGAATACTTGATTACAGGAAGATAGCCTTGTTTGTTTCCTCCAATGACGCTCTGAAGCCAGGTTGGCTTTTGAAAATTTTAAGAGACGTAAAACCTGCTCATATAAAACAAATGCAACAAAATCTTGCCAAGTACTCGAGGCATTTCCTGTATTCCAGTCCAGCTCAACNATTGGGTCCTGAAGACTTGGTTTGGAAAATGATGGCTGGCAAGGTGGTGAACATCAAGCTTCATTCCCGAAGATCTCAACGTGTGGTGGAAGGATCTCGAAATCTGTGCACATGTGAATGCAGGCCTGGCAACATTACGAATACTGGTTCAATAATCTCTTGAATCGCTTTG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00382	140186	145465	-

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GT47

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000382s00020381.1	PF03016.10	Exostosin	116	426	3.60E-72

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	25.069
SRR1783600	control	24.718
SRR1783602	moderate drought stress	23.565
SRR1811619	moderate drought stress	24.334

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	19.038
DRR006520	Root Summer glycyrrhizin high producing strain	18.442
DRR006521	Root Winter glycyrrhizin high producing strain	30.139
DRR006522	Root Winter glycyrrhizin high producing strain	29.477
DRR006523	Root Summer glycyrrhizin low producing strain	16.874
DRR006524	Root Summer glycyrrhizin low producing strain	16.614
DRR006525	Leaf Summer glycyrrhizin high producing strain	9.952
DRR006526	Leaf Summer glycyrrhizin high producing strain	9.173

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	28.438
SRR2868004	Drought Stress (root)	22.972
SRR2967015	Control (root)	25.593

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	13.252
SRR9715740	Leaf	13.178
SRR9715741	Leaf	17.733
SRR9715739	Root	9.369
SRR9715742	Root	16.854
SRR9715743	Root	13.494

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	20.943
SRR8749028	MeJA induced 9h	26.927
SRR8749029	MeJA induced 9h	18.025
SRR8749030	Uninduced	10.817
SRR8749031	Uninduced	8.808
SRR8749032	Uninduced	8.950

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	34.824
SRR8400027	Control - Root	32.180