Gene detail information of Glyur000382s00020374 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G03060.1 | 0 | P-loop containing nucleoside triphosphate hydrolases superfamily protein |
| NR | XP_003540124.1 | 0 | PREDICTED: ATPase family AAA domain-containing protein 3-B-like [Glycine max] |
| COG | YP_003541472.1 | 3.00E-16 | ATPase AAA [Methanohalophilus mahii DSM 5219] |
| Swissprot | tr|P54776|PRS6A_SOLLC | 6.00E-14 | 26S protease regulatory subunit 6A homolog |
| trEMBL | tr|I1LP75|I1LP75_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA12G02020.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00382 | 68608 | 72784 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000382s00020374.1 | PF12037.3 | DUF3523 | 43 | 315 | 4.90E-110 |
| Glyur000382s00020374.1 | PF00004.24 | AAA | 384 | 530 | 3.50E-21 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 10.024 |
| SRR1783600 | control | 10.013 |
| SRR1783602 | moderate drought stress | 11.394 |
| SRR1811619 | moderate drought stress | 11.136 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 9.678 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 9.354 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 5.696 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 5.488 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 15.256 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 15.336 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.284 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.026 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 16.741 |
| SRR2868004 | Drought Stress (root) | 10.234 |
| SRR2967015 | Control (root) | 9.228 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 5.402 |
| SRR9715740 | Leaf | 6.130 |
| SRR9715741 | Leaf | 4.041 |
| SRR9715739 | Root | 2.926 |
| SRR9715742 | Root | 11.028 |
| SRR9715743 | Root | 9.636 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 26.963 |
| SRR8749028 | MeJA induced 9h | 22.535 |
| SRR8749029 | MeJA induced 9h | 13.639 |
| SRR8749030 | Uninduced | 3.313 |
| SRR8749031 | Uninduced | 2.277 |
| SRR8749032 | Uninduced | 2.178 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 11.343 |
| SRR8400027 | Control - Root | 9.304 |