Gene detail

Gene detail information of Glyur000382s00020370.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G03415.1	1.00E-102	Transcription factor DP
NR	XP_004505605.1	0	PREDICTED: transcription factor-like protein DPB-like [Cicer arietinum]
Swissprot	tr\|Q9FNY2\|DPB_ARATH	2.00E-125	Transcription factor-like protein DPB
trEMBL	tr\|A0A072UMP7\|A0A072UMP7_MEDTR	0	Transcription factor DP, E2 dimerization partner protein {ECO:0000313\|EMBL:KEH30661.1}

Sequence

Transcript Sequence

>Glyur000382s00020370.1
CTTTCCCTCACCGGTAACCGCCGTCACCGGCCAGATTTGTTGCCAAAAAATAGATGAAAGATGGGAACGCGANCGCGGCAATCGTGTGGAGAAGAAGAGGAGGAGGAGCTGTTAGGTTGCGGAACCACGATTTCNGGGCAATCAGCGTCGACGAGCAGAAGCGGTGGGTTGCCGTCTAGCCGGAGCGAGCAGACGACGGTGACAACCGTCGCCGGTGATAACACTTTCCTCAAATTAAACCATCTTGACATACACGCTGATGATGATGCTGCATCACAGGGAGCAGTTGCTAGCAAGAAGAAGAAGAGAGGCCAACGGGCTGTTGGAGGTGATAAGAGTGGAAGAGGGCTCCGCCAGTTTAGCATGAAAGTGTGTGAGAAGGTAGAAAGCAAGGGAAGAACAACTTACAATGAGGTGGCAGATGAACTTGTGGCTGAATTTGCTGATCCAGGCAATAGTGTTTTATCCCCTGATCAGCAACAATATGATGAGAAAAACATCCGCCGAAGGGTCTATGATGCTCTGAATGTTCTCATGGCGATGGATATTATTTCTAAGGATAAAAAGGAAATACAATGGAAGGGTCTTCCTCGTACTAGTCAGAATGATATTGAAGAACTAAAGACNGAGCGTCTTGGGCTCAGGAATAGAATTGAAAGGAAAGCCGCTTATCTGCAGGAGCTTGAGGAGCAAGTCTTCAAAACCTTATTCAACGAAATGAGCAATTATATAGCTCAGGAGATTCTCCCAGNGGAGGTGTATCTTTACCTTTTATTCTGGTACAGGTACACCGTCATTCCATTATCTTTCACACGTCCTCATGCAACTGTTGAAGTGGAAATATCAGAAGATATGCAGCTTGTTCATTTTGATTTCAATAGTACTCCTTTTGAGTTGCATGACGACAATTATGTTCTCAAGGCAATGAAATTTTGTGAGAGACCACAGAGTGATGTTGTTACACAAAATGTTACTGATGGAGGGGAAGGTTCTAGCATGTCAGGCTTGTACCAGTCACAGGTTCCTCCTTCAGTTCCAAATCCAAACGTGTCGGTTAGGCCTCCCACATCACCTCCACTCCCTGGAATATTAAAGGCAAGAGTTAAGCAAGAGCATTGATTAGCAAGTTTATCATATCGTCTTACCTTNTTTAAGATTGTTTGTATATTTTGTAAAGAAATTTACTGAATTAATAGACCTTCATAATAGTTAGTTATCAGTACAGCCAACTCTTTCGGTAGGTCAGAAGCAGATCCCTCTGTTCGCTTCCTTATTTTTTTAGGGTAGACTGGCAAATTCTTTGCTTACCATCCATCATTTACTGCCTTAACTAAATTTTTTTCTCTCACATATTTTCGCTGTATATTTTCCTTTGTTGTAGCAAGAGAGAAATCGGTTGTACTAGCCAATCATGGAATGGAATCAAACAGCATATGATTAATTTCGGAATTCACTGATTTATAAAGTGTAAACTGTAAAGTTTTGCAGCTTATATGTGGATATTAGTTGGTATNAGG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00382	56496	60980	+

Gene family

Gene family	subfamily
Transcription Factors Family	E2F-DP

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006355 regulation of transcription, DNA-templated

GO:0007049 cell cycle

cellular_component
GO:0005667 transcription factor complex

molecular_function
GO:0003700 transcription factor activity, sequence-specific DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000382s00020370.1	PF02319.15	E2F_TDP	93	175	3.60E-25
Glyur000382s00020370.1	PF08781.5	DP	182	312	2.80E-28

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	7.751
SRR1783600	control	7.348
SRR1783602	moderate drought stress	5.481
SRR1811619	moderate drought stress	5.427

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	7.191
DRR006520	Root Summer glycyrrhizin high producing strain	6.956
DRR006521	Root Winter glycyrrhizin high producing strain	7.812
DRR006522	Root Winter glycyrrhizin high producing strain	7.660
DRR006523	Root Summer glycyrrhizin low producing strain	11.048
DRR006524	Root Summer glycyrrhizin low producing strain	11.289
DRR006525	Leaf Summer glycyrrhizin high producing strain	5.924
DRR006526	Leaf Summer glycyrrhizin high producing strain	5.861

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	14.049
SRR2868004	Drought Stress (root)	13.913
SRR2967015	Control (root)	13.696

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	5.047
SRR9715740	Leaf	3.997
SRR9715741	Leaf	6.324
SRR9715739	Root	2.126
SRR9715742	Root	5.086
SRR9715743	Root	4.306

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	20.652
SRR8749028	MeJA induced 9h	20.846
SRR8749029	MeJA induced 9h	14.307
SRR8749030	Uninduced	16.987
SRR8749031	Uninduced	5.327
SRR8749032	Uninduced	5.630

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	14.239
SRR8400027	Control - Root	11.513