Gene detail

Gene detail information of Glyur000381s00016147

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G13820.1	6.00E-105	alpha/beta-Hydrolases superfamily protein
NR	XP_004505362.1	5.57E-177	PREDICTED: uncharacterized hydrolase YugF-like [Cicer arietinum]
COG	YP_001866223.1	8.00E-38	alpha/beta hydrolase fold protein [Nostoc punctiforme PCC 73102]
trEMBL	tr\|G7JHI3\|G7JHI3_MEDTR	8.00E-174	Alpha/beta fold hydrolase {ECO:0000313\|EMBL:AES90000.1}

Sequence

Transcript Sequence

>Glyur000381s00016147.1
GAAAGTCACGCGAATAAAATCGCGCGAGTTAAGTCGGTGGAACAGAGGATGAACATTGAGTGGCAGTTACTGGGTGGGAAGGGGGAACAAGGTTNGTTGAGTTGAAGGCGTTGGCGTTATTACTGTCGTTTCAGTTTCAATTTCAATCCTCTCCGACGCTATTACCAGCTCAGTCTCACTCTCACTTCNCTTGTGACAAAAATGGTTGCTTTTTCCCCGCCCTTGGCACTTGCACTTCCCAAATTCAAGGTTGTGGCTGAAGCTGAAGCTGGAGCTGGTGCTTTCCCTTCCTTTCTTCCCAAAGACGTTCACAGAATCAAAGACCCATTTGCTCGAAACCTCGCTATGCGGATTCAGAGACTTCCCGTATCCGTTAGGTTCTCTGAAAATCCCATCATGAGTAGTTGTGTGAAGCCATTGATGCAGAGCAAGGCAAATCCAGTTGTGCTTCTACATGGTTTTGACAGCTCATGCTTAGAATGGAGATGCACATATCCATTGCTTGAGGAAGCTGGTTTTGAGACATGGGCCATTGACATTCTTGGTTGGGGTTTCTCTGATCTAGAAAAACTTCCTTCATGTGATGTGGTATCAAAGCGTGAACACTTTTATCAGGTGGAAAAGCTTGTTTTGATTGATGCTAGNGTATATGCAGAAGGAGCAGGAAACCTAGCAACCTTACCTAGAGCAGTAGCCTATGCTGGGGTGAAAAATATTTCAAATAGTTCATTTCCCCCTACTAAAATGATGCAAGTCACACTCACCACTGGCTCTGTTTTGAATCAGAGCATTCCGTTACGCTTATATGCAAATTATTTGTCCTTCACTAACATATCTTTCAGTACCAGCCTTGATTGGACTAATATTGGCCGCTTGCATTGTTTATTGCCTTGGTGGGANGATGCTACTGTTGATTTTATGATTAGTGGTGGCTATAATGTTGCTTCCCAGATAGAAAAGGTAAAGCAGAAAACACTCATCATTTGGGGGGAGAATGACCGTATAATCAGCAATAAGCTTGCAGTGCAACTGCACTGTGAATTACCTGATGCAATTATACGCCAAATACCCGATTGTGGTCACCTTCCTCATGTTGAAAGACCAGGTTTCGTTGTCAAATTCATTGTTGAGTTTGTTCAGAGGGATACCAAGACAGTGAATCAATGTGTTTCACCATGTCATCAAGATTTTGTTGAGAGTGAAACTGCCACGTTTTATTGCCAAACAGGTTGGAAATTCGAAGGAATCATTCTGTGCATAAACAAGTATCAAATTCCATTTGTTGGAGGAATCATGCACTGCTTCATCCAGAGGGAAAAACAAAATCAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00381	165468	169305	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000381s00016147.1	PF12697.2	Abhydrolase_6	81	121	6.60E-06
Glyur000381s00016147.1	PF12697.2	Abhydrolase_6	138	305	6.30E-12
Glyur000381s00016147.2	PF12697.2	Abhydrolase_6	81	183	2.00E-16
Glyur000381s00016147.3	PF12697.2	Abhydrolase_6	44	124	1.10E-10

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.341
SRR1783600	control	0.340
SRR1783602	moderate drought stress	0.178
SRR1811619	moderate drought stress	0.158

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.492
DRR006520	Root Summer glycyrrhizin high producing strain	1.512
DRR006521	Root Winter glycyrrhizin high producing strain	4.359
DRR006522	Root Winter glycyrrhizin high producing strain	4.187
DRR006523	Root Summer glycyrrhizin low producing strain	2.403
DRR006524	Root Summer glycyrrhizin low producing strain	2.509
DRR006525	Leaf Summer glycyrrhizin high producing strain	24.991
DRR006526	Leaf Summer glycyrrhizin high producing strain	24.897

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	6.031
SRR2868004	Drought Stress (root)	7.801
SRR2967015	Control (root)	5.875

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	8.631
SRR9715740	Leaf	9.196
SRR9715741	Leaf	5.937
SRR9715739	Root	0.316
SRR9715742	Root	0.064
SRR9715743	Root	0.000

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.454
SRR8749028	MeJA induced 9h	0.157
SRR8749029	MeJA induced 9h	0.186
SRR8749030	Uninduced	0.682
SRR8749031	Uninduced	0.543
SRR8749032	Uninduced	0.979

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.369
SRR8400027	Control - Root	1.683