Gene detail information of Glyur000381s00016144 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G03480.1 | 1.00E-156 | QUASIMODO2 LIKE 2 |
| NR | XP_003607798.1 | 0 | hypothetical protein MTR_4g083030 [Medicago truncatula] |
| COG | YP_003541697.1 | 7.00E-06 | sarcosine/dimethylglycine N-methyltransferase [Methanohalophilus mahii DSM 5219] |
| Swissprot | tr|Q3EC77|PMT5_ARATH | 0 | Probable methyltransferase PMT5 |
| trEMBL | tr|G7JHH8|G7JHH8_MEDTR | 0 | Methyltransferase PMT16, putative {ECO:0000313|EMBL:AES89995.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00381 | 145042 | 149547 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000381s00016144.1 | PF03141.11 | Methyltransf_29 | 96 | 401 | 1.70E-78 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 10.892 |
| SRR1783600 | control | 11.065 |
| SRR1783602 | moderate drought stress | 8.964 |
| SRR1811619 | moderate drought stress | 9.047 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 11.430 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 11.493 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.449 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 4.386 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 13.445 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 13.865 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 6.740 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 6.636 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 25.266 |
| SRR2868004 | Drought Stress (root) | 23.821 |
| SRR2967015 | Control (root) | 22.114 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 10.436 |
| SRR9715740 | Leaf | 9.183 |
| SRR9715741 | Leaf | 9.988 |
| SRR9715739 | Root | 7.903 |
| SRR9715742 | Root | 14.670 |
| SRR9715743 | Root | 13.251 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 8.977 |
| SRR8749028 | MeJA induced 9h | 7.238 |
| SRR8749029 | MeJA induced 9h | 4.372 |
| SRR8749030 | Uninduced | 5.451 |
| SRR8749031 | Uninduced | 3.333 |
| SRR8749032 | Uninduced | 3.481 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 21.057 |
| SRR8400027 | Control - Root | 25.531 |