Gene detail

Gene detail information of Glyur000381s00016140.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G26560.1	1.00E-97	beta glucosidase 40
NR	AES89992.2	6.03E-134	beta-glucosidase [Medicago truncatula]
COG	YP_003323667.1	2.00E-55	beta-galactosidase [Thermobaculum terrenum ATCC BAA-798]
Swissprot	tr\|Q9FZE0\|BGL40_ARATH	6.00E-117	Beta-glucosidase 40 (Precursor)
trEMBL	tr\|G7JHH5\|G7JHH5_MEDTR	2.00E-134	Beta-glucosidase {ECO:0000313\|EMBL:AES89992.2}

Sequence

Transcript Sequence

>Glyur000381s00016140.1
CATTCCCATTCCCACCCCATTACTTTACTCCTTGCTGTCTCCCATTTCCCCCCCTCTCATCCCCTCTCTCTATATAAGTACATTTTTGTTATGTATATTCCAGTTCTGTTGCAAAACTGAATCTTCCTAATTACCTTTCTCTCACCCTCTCTATAAACCATGGCTTTGAGAAGAAGCATTGCTCTGATCATATTAGCAACGATAATAACATGCTTTGAGATTCAGATATGCGTGTCGGAGATAAACAGGGCAGACTTTCCAAGTGGCTTCACATTTGGCACTGCCTCCTCTGCTTACCAGTATGAAGGAGCAGTGAGAGAAGACGGAAGGGGACCATCTGTATGGGATAAATTTTCGCATACTTTTGATGGATCTGGAGAAATCAATCAAGCAGGAATTGATCATTACAATAAACTCATCAACGCATTATTGGCAAAAGGNATTGAACCTTATGTGACCCTCTACCACTGGGACCTACCTCAAGCCTTGGAAGACAAATATAATGGGTGGCTCAGCCCTGAGATAATTAATAACTCGATTATTCCACAGAAAATACAGGGTGGATCAATTGGGATAGCTTTCGATGTCATTTGGTATATACCAGCCACAAACACCAAAGAAGACATTGAAGCAGCTCAGAGAGCTCAAGATTTTCAGCTAGGCTGGTTTCTTGATCCTCTGATGTTTGGAGATTATCCAAGCTCAATGAGAAGCAGAGTAGGAGATAGGCTGCCAAAATTTTCTCAATCTGAGGCTGCTCTTCTTAAGGGTTCATTAGATTTTGTTGGAATCAATCATTACACCACATTTTATACAAGAAANAATGCTACTAATTTGATTGGAGTTTTGCTCAATGATTCTATTGCAGACTCCGGTACCATTTCCCTTCCATTCAATGGTACANACGCTATTGGAGAAAGGGCAAATTCCATATGGTTGTATATTGTGCCAGAAAGTATGAGAGCCTTAATGAACTACATCAAACAAAAGTATGGGAACCCTCCTGTCTTTATCACCGAAAATGGGATGGATGATGCAAATAATCCATTTATCCCCATAAAGGNTGCCCTGCAGGATCAGAAACGAATTAGATACCACCATGACTATTTGTCTTACTTACTGGCTGCTATCAAAGATGGTTGCAATGTGAAAGGATATTTTGCATGGTCACTACTGGATAACTGGGAGTGGGCAGCTGGATTCTCTTCTAGATTTGGCGATGGAGGTTCCGACTTAGGCCAATGCCCAAAGGCCAAAATATGCATATCGGAGATAAACAGGGCAGACTTCCCAAGTGACTTCATATTTGGCACTGCCTCTTCAGCTTACCAGGAAGACATATTACTCATGAAGGACTTGGGGATGGATGCTTATAGATTATCCATTTCTTGGTGCCGGATTTTTCCCAATGGATCCGGCGAAATCAATCAGGCAGGAATTGATCATTACAATAAATTAATCAACGCATTGCTGGCAAAAGCCACAAACACCAAAGAAGACATTGACGCTGCTCAGAGAGCTCAAGATTTTCAGCTAGGCTGGTTTCTTGATCCTCTGATGTTTGGAGATTATCCAAGCTCAATGAGAAGCAGAGTAGGAGATAGGCTGCCAAAATTTTCTCAATCTGAGGCTGCTCTTCTTAAGGGTTCATTAGATTTTGTTGGAATCAATCATTACACCACATTTTATACAAGAAACAATGCTACNAATTTGATTGGAGTTTTGCTCNATGATTCTATTGCAGACTCCGGTACCATTTCCCTTCGTAAGTTTCAGACCAAACAATATCAAGGAATCATTTTCTTTTCGTCATTCAATGGTACACACGCTATTGGAGAAAGGGGAAATTCCATATGGTTGTATATTGTGCCACAAAGTATGAGAACCTTAATGAACTACATCAAGCAAAAGTATGGGAACCCTCCTGTCTATATCACCGAAAATGGGATGGATGATGTAAATAATCCATTTATCCCCATTAAGCTTGCTCTGCTGGACTATAAACGGATTAGATACCACAGTGGCTATTTATCTTACTTACTGGCTGCTATCAAAGATGGTTGTAATGTGAAAGGATATTTTGCATGGTCACTACTGGATAACTGGGAGTGGGCAGCTGGATACTCTTCTAGATTTGGTCTGTATTTTGTTGAGTACAAAGACAACCTGAAGAGATACCCAAAACTATCTGTAGGATGGTTCAAGAACTTCTTGAAACCAACTAAATAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00381	119406	134775	-

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GH1

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01188	E3.2.1.21	EC:3.2.1.21	Starch and sucrose metabolism	map00500
			Starch and sucrose metabolism	map00500
			Starch and sucrose metabolism	map00500
			Starch and sucrose metabolism	map00500
			Cyanoamino acid metabolism	map00460
			Cyanoamino acid metabolism	map00460
			Cyanoamino acid metabolism	map00460
			Cyanoamino acid metabolism	map00460
			Phenylpropanoid biosynthesis	map00940
			Phenylpropanoid biosynthesis	map00940
			Phenylpropanoid biosynthesis	map00940
			Phenylpropanoid biosynthesis	map00940

Gene Ontology

biological_process
GO:0005975 carbohydrate metabolic process

molecular_function
GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000381s00016140.1	PF00232.13	Glyco_hydro_1	31	68	3.70E-13
Glyur000381s00016140.1	PF00232.13	Glyco_hydro_1	71	124	1.00E-19
Glyur000381s00016140.1	PF00232.13	Glyco_hydro_1	130	353	1.70E-54
Glyur000381s00016140.1	PF00232.13	Glyco_hydro_1	390	440	6.80E-18
Glyur000381s00016140.1	PF00232.13	Glyco_hydro_1	442	686	2.00E-57

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	5.629
SRR1783600	control	5.828
SRR1783602	moderate drought stress	3.037
SRR1811619	moderate drought stress	2.938

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.862
DRR006520	Root Summer glycyrrhizin high producing strain	3.634
DRR006521	Root Winter glycyrrhizin high producing strain	0.084
DRR006522	Root Winter glycyrrhizin high producing strain	0.082
DRR006523	Root Summer glycyrrhizin low producing strain	6.697
DRR006524	Root Summer glycyrrhizin low producing strain	6.737
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.134
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.551

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	16.499
SRR2868004	Drought Stress (root)	11.662
SRR2967015	Control (root)	9.428

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.732
SRR9715740	Leaf	4.612
SRR9715741	Leaf	3.145
SRR9715739	Root	1.678
SRR9715742	Root	3.265
SRR9715743	Root	2.492

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.609
SRR8749028	MeJA induced 9h	0.770
SRR8749029	MeJA induced 9h	1.001
SRR8749030	Uninduced	0.356
SRR8749031	Uninduced	0.181
SRR8749032	Uninduced	0.080

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	6.250
SRR8400027	Control - Root	5.570