Gene detail information of Glyur000381s00016138.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G39320.10UDP-glucose 6-dehydrogenase family protein
NRXP_004505368.10PREDICTED: UDP-glucose 6-dehydrogenase-like isoform X1 [Cicer arietinum]
COGYP_003548756.10nucleotide sugar dehydrogenase [Coraliomargarita akajimensis DSM 45221]
Swissprottr|Q96558|UGDH1_SOYBN0UDP-glucose 6-dehydrogenase 1
trEMBLtr|V7CI16|V7CI16_PHAVU0UDP-glucose 6-dehydrogenase {ECO:0000256|PIRNR:PIRNR000124}

Sequence

Transcript Sequence
Protein Sequence


Location information (JBrowse)

ScaffoldStartEndStrand
Scaffold00381113067115518-


Gene family

Gene familysubfamily
----


KEGG pathway

KOEnzymeEnzyme IDpathwaymapID
K00012UGDH, ugdEC:1.1.1.22Pentose and glucuronate interconversionsmap00040
Ascorbate and aldarate metabolismmap00053
Amino sugar and nucleotide sugar metabolismmap00520


Gene Ontology

biological_process

GO:0055114  oxidation-reduction process


molecular_function

GO:0003979  UDP-glucose 6-dehydrogenase activity

GO:0016616  oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor

GO:0051287  NAD binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000381s00016138.1PF03721.9UDPG_MGDP_dh_N182024.50E-65
Glyur000381s00016138.1PF00984.14UDPG_MGDP_dh2253224.00E-33
Glyur000381s00016138.1PF03720.10UDPG_MGDP_dh_C3444676.00E-35


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control8.484
SRR1783600control8.794
SRR1783602moderate drought stress6.223
SRR1811619moderate drought stress6.224

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain19.249
DRR006520Root Summer glycyrrhizin high producing strain19.089
DRR006521Root Winter glycyrrhizin high producing strain17.169
DRR006522Root Winter glycyrrhizin high producing strain16.867
DRR006523Root Summer glycyrrhizin low producing strain13.922
DRR006524Root Summer glycyrrhizin low producing strain13.851
DRR006525Leaf Summer glycyrrhizin high producing strain1.002
DRR006526Leaf Summer glycyrrhizin high producing strain0.945

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress (root)11.158
SRR2868004Drought Stress (root)8.285
SRR2967015Control (root)8.649

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leaf1.954
SRR9715740Leaf3.130
SRR9715741Leaf3.151
SRR9715739Root19.670
SRR9715742Root19.094
SRR9715743Root20.117

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h2.314
SRR8749028MeJA induced 9h3.881
SRR8749029MeJA induced 9h5.019
SRR8749030Uninduced2.248
SRR8749031Uninduced2.063
SRR8749032Uninduced6.118

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment - Root18.924
SRR8400027Control - Root20.278

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved