Gene detail

Gene detail information of Glyur000381s00016136.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G26610.1	5.00E-39	C2H2-like zinc finger protein
NR	XP_007158625.1	2.49E-121	hypothetical protein PHAVU_002G168500g [Phaseolus vulgaris]
Swissprot	tr\|Q9M202\|ZAT9_ARATH	2.00E-12	Zinc finger protein ZAT9
trEMBL	tr\|V7CKF3\|V7CKF3_PHAVU	9.00E-122	Uncharacterized protein {ECO:0000313\|EMBL:ESW30619.1}

Sequence

Transcript Sequence

>Glyur000381s00016136.1
ATGGAGAAGAGGAAGTTTGTGTGCAAGTATTGCTGCAAGAGGTTTCCTTGTGGGAAGTCTCTGGGTGGTCACATTAGGACCCATATGAGTGAAGGAAGAAGTAATAATGCTGCTGCTGATAGTGACACACTGACCAAGTTGGATGGTGGGAGAAAGAAGAGAGATTTATGGTCTGAAGCTGGTGGTGGTGGTGGGAAGAATTCCTCCATTTATGGGCTCAGAGAGAACCCCAAGAAAACCATAAGGTTTGTGCATTCCGATGCTGCTGCTGCCACCACCTTGGAACAGGAGCAGAAGGAGGAAAGGTTCTGCAAAGAATGTGGGAAAGGCTTTTCCTCATTGAAAGCTCTCTGTGGTCACATGGCTTGTCACTCTGAGAAAGACAAGAAGGAGAAACTGGTTGTTATGGATAGTCAATCTGATACTGAGACTAATACTACTTGTGCTGCTCCAATTAGGAGATCCAAGAGGATGATGAGGTTCAAGTCACTTTCCTCTTCTTCTGTTAATGTGTCAGAGGTTGAGCAGGAACAAGAGGAGGTGGCTATGTGCTTGATGCTCTTGTCCAAAGATTCTTTTGGTCACAGGAATCGTTTTGCTTCTGAATCTTCTGATAATAACTCGGTTGTTCTGGAGACAAAATCATCTTCTCTTGATACCAAGATCGCTATCAGACATAATGGCAACAACAACTTTGTGGAGAAGAAGAAGCTGGTCAAGGACACCAAGTTAAAGTCTTCTGTTGGGGTTGGTGTTTCTAATAATTCAGATTCTAGATACTTCAGATATGGTTCCATGGAAGATAAGTCTGGATTTGAGGATTACAATTGTGAATTGAATGGAGGCAACAGAAGCAAACACACTGTAACTGTGTTTAAGAAACTAAGGGTGAAGGATTTGGATCATGATAGAACAGATGAAATCTACGAGAATGGTAGAAAGGGTTGGGAGCATGAGTGGTTGGTGAGTGAAAGGGACAATGGCTGTTATGATTCAACAACAGATGATGAGAACAGTTCAGAGAGTGATTCATTTCCAGCTCCAAGGTCTCATCATACCAGTAAAGCTGTCAATAGTAGAAAGAACAAGTCCAGCAAGGCCAAGAAGAAGAAGAAGAAGTTGAAGACAAAGAAAAGCAGGGAACATGAGTGCCCAATTTGCTACAAGATTTTCAGGTCAGGCCAAGCTTTAGGGGGTCATAAAAGATCACATTTTGTTGGAGGAGGCTCTGAGGAAAACACTCCTCTGGTGATCAAACAAGGTGGTGTTCCTCCTCCTCCTCCTGCTGTTCCTTGTTTGATTGATCTCAATCTACCTGCTCCTGTTGATGAATAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00381	102761	104095	-

Gene family

Gene family	subfamily
Transcription Factors Family	C2H2
EAR motif-containing Proteins	C2H2

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0046872 metal ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000381s00016136.1	PF13912.1	zf-C2H2_6	6	30	0.0069
Glyur000381s00016136.1	PF13912.1	zf-C2H2_6	103	125	0.00096
Glyur000381s00016136.1	PF13912.1	zf-C2H2_6	382	404	1.90E-09

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.162
SRR1783600	control	0.322
SRR1783602	moderate drought stress	0.139
SRR1811619	moderate drought stress	0.096

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.081
DRR006520	Root Summer glycyrrhizin high producing strain	0.080
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.383
DRR006524	Root Summer glycyrrhizin low producing strain	0.245
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.000
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.000

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.621
SRR2868004	Drought Stress (root)	0.404
SRR2967015	Control (root)	0.265

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.006
SRR9715740	Leaf	0.000
SRR9715741	Leaf	0.000
SRR9715739	Root	0.000
SRR9715742	Root	0.086
SRR9715743	Root	0.095

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	4.589
SRR8749028	MeJA induced 9h	2.740
SRR8749029	MeJA induced 9h	2.301
SRR8749030	Uninduced	0.451
SRR8749031	Uninduced	1.027
SRR8749032	Uninduced	1.121

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.287
SRR8400027	Control - Root	0.579