Gene detail

Gene detail information of Glyur000381s00016121

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT2G03380.1	Pentatricopeptide repeat (PPR) superfamily protein
NR	XP_004514248.1	PREDICTED: pentatricopeptide repeat-containing protein At3g09040, mitochondrial-like [Cicer arietinum]
Swissprot	tr\|Q9ZQ74\|PP146_ARATH	Pentatricopeptide repeat-containing protein At2g03380, mitochondrial (Precursor)
trEMBL	tr\|G7JGB1\|G7JGB1_MEDTR	PPR containing plant-like protein {ECO:0000313\|EMBL:AES89960.2}

Sequence

Transcript Sequence

>Glyur000381s00016121.1
ATGTCGGAGGCGACGGAGTTAGAGAGGGAGTTGAGGTCAGATGGGGTGATGGGATCTCTGGAACCACATTCCTTGTCCGTTTTTGGAACAATCAACATGGTGGTGGTACCAAGATTTGTGGTTCTTACCTCGAAAGCTCGTCTTCAATGGAGGAGCAACCATGCACAGGCACATGCTGCAGCCCACCACCTACCACTGCCACTCCCTCCAACATTCTACCTGGCTCGTATCTGCAGAAACGTCGACGCCGTGAAGAAGCTCCACGCCTCCCTCCTCGTCCACGGCATCNCCGCCGACACGAACCTCCTCAGCCTCTACGCTTCTTTCGGCCTCCTCCGCCACGCGCGCCTCCTCTTCCACCGCCTACTACCCTCCCCCGACCTCCGCTCCTTCAAGCTCATGATCCGCTGGCACTTCCTCAACGACATGCACTCCCACGTCGTTTCCTTCTACCACCTCGCCAGGCTCACCCTCGGCTTCTGCCACGACCTCGCCGTCTTCTCCATCGCCCTCAAGGCCTCCTCCGAGCTACGCGACGTCGTTCTCGCNGCCAGGGTCCACTGCCACGTCATCAAATCCAATTCCCCCGACGCCTTCGTCCTCACCGGTCTCGTCGACGCCTACTCCAAGTGCGGACACGTCATCTCCGCGCGCAAGGTGTTCGACGAAATCCCCGACCGAAACGTCGTGTCGTGGACCTCGATGATTGTCGCTTACGTGCAAAACGACTGCGCCGCGGAAGGGATGCGCTTGTTTAATCGGATGAGGGAAGGGTTCGTGGATGGGAATGAGTTCACGGTTGGGAGCCTGGTGACCGCGTGCACCAAGCTTGGTTACTTGCATCAGGGGAAGTGGGTTCACGGGTATATCATTAAGAATGGGATTCCGATGAATTCGTTCCTGGTATCGTCCCTTTTAAACATGTACGTTAAGTGTGGGGACGTTGGGGATGCTCGTTCCGTGTTTGATGGGTGTGGAAACGACCTCGTTTCATGGACTGCAATGATTGTTGGGTACACTCAGAGGGGTCATCCCCACGCCGCGTTGGANTTGTTCACTGACAAGAAATGGTTGGGGATTTTGTCACCCAATTCTGTTACCCTCGCGAGTTTGCTTTCCGCGTGTGCTCAATTGTGCAATGCCGTTATGGGAAAATCACTTCATGTTCTCGTGGTTAAGTATGGGTTGGAGGATGATACTCCCGTGAGGAATGCCCTTGTTGATATGTATGCAAAGTGTCACCTCATTTCTGATGCCCGTTATGTGTTTGAAACTACGGTTGACAAGGATGTTGTCTCTTGGAACTCCGTTATTTCTGGTTATGCAAGGAGTACTGGTGATTACGCATATGAAGCTCTTGGGCTCTTCCAAAGGATGAGATNGGAATCGGAGTCATTTTCGCCCGATGCGGTTACGGTGGTTGGTGTTATCTCNGCGTGTGCTTCCCTTGGTGCTCTTCAACTTGGTTCTTCCATTCATGCTTTTGCCTTCAAGGAGGGATTGGTGTGCTCTAGCATCCACGTTGGCACTGCNCTGCTCAACTTTTATGCAAAATGTGGAGATGTAAAATCGGCTCGCTTGGTGTTTGATGGAATGGGGGAGAAGAACACGGTGACGTGGAGCGCGATGATTGGTGGTTGCGGCATGCACGGCGATGGCGTTGGATCTCTTGCGCTCTTTAGGGACCTGTTGAGGGAGGAATTTGAGCCAAATGAAGTGGTCTTCACANCTATGTTGGCGGCTTGCAGCCATTCGGGGATGGTTGGAGAAGGCTCGAGGCTATTTGATTTGATGTGTCGGGAATTGAATTTAGTTCCTTCCATGAAGCACTATGCNTGTATGGTTGATCTGTTGGCACGTGCTGGCAACCTCGAAGAGGCGTTGGAGTTTATTGATAGAATGCCTGTTCAACCTGGTGTTGGTGTATTTGGAGCTTTTCTACATGGGTGTGGACTTCACTCCAAGTTTGAATTGGGAGAGGTGGCAATTAGGAGGATGTTGGAGCTGGACCCTNATCAAACGTGTTACTACGTGCTCATGTCAAACCTGTATGCTTCGGATGGGAGATGGGGCATGGTTAAGCAGGTGAGAGAGATGATAAAGCGAAGCGGGTTGAATAAGGTCCCTGGTGTTAGTTTAGTGGAGATGGATGTCAACAAGGATGCATATGCCAAAGTGGCAGCTCTTCCTTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00381	43652	46269	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000381s00016121.1	PF01535.15	PPR	202	228	0.016
Glyur000381s00016121.1	PF01535.15	PPR	230	257	0.0001
Glyur000381s00016121.1	PF01535.15	PPR	303	323	0.23
Glyur000381s00016121.1	PF01535.15	PPR	330	358	0.0064
Glyur000381s00016121.1	PF01535.15	PPR	432	460	0.2
Glyur000381s00016121.1	PF01535.15	PPR	510	536	0.12
Glyur000381s00016121.1	PF01535.15	PPR	538	566	0.0025
Glyur000381s00016121.1	PF01535.15	PPR	573	600	0.014
Glyur000381s00016121.1	PF01535.15	PPR	611	634	0.0034

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.365
SRR1783600	control	3.233
SRR1783602	moderate drought stress	5.009
SRR1811619	moderate drought stress	4.839

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.925
DRR006520	Root Summer glycyrrhizin high producing strain	2.201
DRR006521	Root Winter glycyrrhizin high producing strain	3.483
DRR006522	Root Winter glycyrrhizin high producing strain	3.262
DRR006523	Root Summer glycyrrhizin low producing strain	2.255
DRR006524	Root Summer glycyrrhizin low producing strain	2.306
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.230
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.969

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	5.541
SRR2868004	Drought Stress (root)	5.164
SRR2967015	Control (root)	5.273

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.889
SRR9715740	Leaf	2.366
SRR9715741	Leaf	2.332
SRR9715739	Root	2.433
SRR9715742	Root	6.763
SRR9715743	Root	5.482

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.742
SRR8749028	MeJA induced 9h	2.586
SRR8749029	MeJA induced 9h	0.974
SRR8749030	Uninduced	0.680
SRR8749031	Uninduced	0.201
SRR8749032	Uninduced	0.279

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	9.521
SRR8400027	Control - Root	9.867