Gene detail

Gene detail information of Glyur000381s00016115

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G13720.1	6.00E-33	Uncharacterised protein family (UPF0114)
NR	KHM99434.1	1.36E-135	hypothetical protein glysoja_046507 [Glycine soja]
COG	NP_906617.1	8.00E-11	integral membrane protein [Wolinella succinogenes DSM 1740]
trEMBL	tr\|K7N109\|K7N109_SOYBN	9.00E-136	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA20G03395.1}

Sequence

Transcript Sequence

>Glyur000381s00016115.1
AAAATTCAAATTGGAATATATTGGACAAAATATTCAATTCAATTGTGAATGGCAACCGCTAAATTGTTGCGCACATCGTCTAGGCCATTACAACTCCCTTCTTCTTCTTCTTCTTCTTCTTCTTCTATTTCTTCTTCGTTTATTAAATGTGTACGGCACTGCTATCAAAGCAGGGCCAGTTTGAGTGGATATCGTATCATAGCTTCTGGGAAAGGAGAAAGGGAGCAAGTGGTGGCCGTGAAGGCATCGATGGGTACCGCCAACCACATAACCACATCACAACTAGTGGTTCGTGATCGGGAAGGGTTGTCAAATTTAGCTGCGATTATATCAAGTATTCGCAATGCTATGCTGNTTCTTTTGCGGGCTGCTCTCAACANGAAGACATGGATCAATTTACAACCACAGATGCTCATTGAAAGGGCAATCACGGATTGTAGATTCTTTACATTGTTCGCCGTAGCAGGATCTTTACTTGGCTCAGTATTGTGTTTTTTTGAGGGCTGTCTTCTTGTTATAGAGTCATACGCGCATTATTTTCACACGCTGTCTCAAAGGTTGGATCAAGGACATGATTTGGTGCATCTACTTATTGAAGCCATAGACATGTTCATGGTAGGAACTGCCTTGTTCATTTTTGGGGTGGGTTTGTACATCATGTTTGTGGGACCAAGGAGTACTACTAGTAAAGAAAAAGGACCGTGGCTTTGTGGGTCAAACTTTCTTGGGCTGTTCTACATGAAGTCACCCCCTGGGTGGGCTGGGATGCAATCCATTGAGCAAGCGAAGTCGAAGATTGGGCACGCGGTGATGATGATTCTTCAGGTGGGACTATTAGAGAAGTTCAAGGATATACCCTTAGTCACAGGCGTTGATCTTGCTTGTTTTGCTGCAGCTGTACTCACATCTTCAGCTTCCATTTTTGTCCTCTCTAGGCTTCATTGAATGCTGACGTAAGCATGGAATTAACACTATTCCAAATTCATATATTTTTTTGTTTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00381	23291	25934	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000381s00016115.1	PF03350.11	UPF0114	127	267	7.60E-33

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.399
SRR1783600	control	1.308
SRR1783602	moderate drought stress	0.191
SRR1811619	moderate drought stress	0.212

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	7.131
DRR006520	Root Summer glycyrrhizin high producing strain	7.148
DRR006521	Root Winter glycyrrhizin high producing strain	0.668
DRR006522	Root Winter glycyrrhizin high producing strain	0.637
DRR006523	Root Summer glycyrrhizin low producing strain	14.444
DRR006524	Root Summer glycyrrhizin low producing strain	15.251
DRR006525	Leaf Summer glycyrrhizin high producing strain	6.356
DRR006526	Leaf Summer glycyrrhizin high producing strain	6.102

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.229
SRR2868004	Drought Stress (root)	0.441
SRR2967015	Control (root)	0.127

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	8.238
SRR9715740	Leaf	0.879
SRR9715741	Leaf	9.395
SRR9715739	Root	13.640
SRR9715742	Root	9.478
SRR9715743	Root	8.211

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.804
SRR8749028	MeJA induced 9h	13.451
SRR8749029	MeJA induced 9h	21.437
SRR8749030	Uninduced	46.280
SRR8749031	Uninduced	60.098
SRR8749032	Uninduced	53.702

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	10.268
SRR8400027	Control - Root	34.896