Gene detail

Gene detail information of Glyur000381s00016114

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G03340.1	3.00E-52	WRKY DNA-binding protein 3
NR	XP_003520097.1	9.07E-128	PREDICTED: probable WRKY transcription factor 4-like [Glycine max]
Swissprot	tr\|Q9XI90\|WRKY4_ARATH	1.00E-67	Probable WRKY transcription factor 4
trEMBL	tr\|I1JE94\|I1JE94_SOYBN	3.00E-128	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA02G12490.1}

Sequence

Transcript Sequence

>Glyur000381s00016114.1
GAGAAAATGGAAGGAAGCAGAGGTTGTCTTCGTGGTATGTGGGGCGTGGACTTTTTGGTGAAATTGAGAATTGAGATCAACGAAACCCAGAAACCAAACCAACCAACCAAACAAGCGGAATCATCGTATCACAGACACAGAACAAAATTGTTGGAAAGTGGAAACTTTTAGAGACAAAGGGTTGGAGTGTGTGTTTTGTTTGTTTGGCTCTGCTCTGNTTTTGAATCAATTGAAGTGAATGGTTGGGGGTGGAAATGGAGAGGGACAGCAACAGGAAGCTCCACCGTGGACGGCGGCGCGTCCCAGCATCAGTATCCCGGCATGCGCATGGATGGAGAGTAGTGGGGTGAGCGTCAGCCCGGGTCCCATGACTCTGCTTTCGAGCTTGTTTGGCGACACCGATGAGTGCAACAAGTCGTTCTCGGAGCTGCTCGCCGGCGCCGCCATGGTGGAGCACGGTGAAGCTGCTCCTCCCAGTGGCTTGATGTTCACCACCCTTCCACCTCACCAGGTCTCAGCTCAGGCTGTGCAAAACCAAGCAGAACATCCATTCTCTGTATCACTAGTGCCTCCTACCTCATTGACACAAACTCCTGCAACTACTTTCACTACTGGACAACAGCTGGTACCACCCTCAGAGTCCCTTGATTACTCTTCTCACTCTGAACAAAGATTGCAGTCTTCTTCTTCTTCTTCTTCTTCTAAACAAGTGAAGGGCTGTGAGTTCCCAAGAAGTTATTATAAGTGCACATACCCAAGCTGTCCCGTTAAGAAAAAGGTTGAACGCTCCCTTGAGGGTCATGTAACTGCCATTATTTATAGAGGAGAGCACAGTCATCAACGCCCTCATCCCAGCAAGCTCACAAAAGACAACCTTGTAACTTCAAATGAAAACTCAGATATGCAAGAAGGGATAAGTTCTCATCCAATGAGTGAAATAGATCCAGAGCCTAGTCAGGCAATGGCTGAAGTACATGTGTCAGGAACAAGTGACAGTGAAGAAGTAGGAGATCATGAAATTGAGGAAGAGGAGAAAAATGATGAACCTGTTCCCAAGAGAAGGACTGTCTCATCAGAGCCTAGAATCATTGTGCAAACAACAAGTGAAGTGGATCTATTAGAAGATGGATATAGATGGCGCAAATATGGGCAGAAAGTCGTCAAAGGCAACCCCAATCCAAGGGTTTCAACGGATCCTAAAGCTGTCATGACAACATATGAAGGAAAACATAATCATGAGGTGCCAGCAGCTAAGACTAATAGCCACACTCTTGCCAACAATAGTGCATCACAAAATGTCATACCCGAGATGCATAATTTCAACAGCAGGGGTGTTGGAGGCAATGAGCACATTGAGCAGCAGCCTGTAGCATATGAGGCCTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00381	15511	18139	-

Gene family

Gene family	subfamily
Transcription Factors Family	WRKY

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

molecular_function

GO:0003700 transcription factor activity, sequence-specific DNA binding

GO:0043565 sequence-specific DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000381s00016114.1	PF03106.10	WRKY	156	201	5.40E-18
Glyur000381s00016114.1	PF03106.10	WRKY	295	315	8.90E-09

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	16.289
SRR1783600	control	16.788
SRR1783602	moderate drought stress	19.043
SRR1811619	moderate drought stress	19.343

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	10.612
DRR006520	Root Summer glycyrrhizin high producing strain	10.657
DRR006521	Root Winter glycyrrhizin high producing strain	27.691
DRR006522	Root Winter glycyrrhizin high producing strain	26.626
DRR006523	Root Summer glycyrrhizin low producing strain	18.935
DRR006524	Root Summer glycyrrhizin low producing strain	19.181
DRR006525	Leaf Summer glycyrrhizin high producing strain	14.847
DRR006526	Leaf Summer glycyrrhizin high producing strain	16.327

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	29.144
SRR2868004	Drought Stress (root)	38.773
SRR2967015	Control (root)	44.745

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	20.021
SRR9715740	Leaf	29.832
SRR9715741	Leaf	30.105
SRR9715739	Root	4.280
SRR9715742	Root	16.071
SRR9715743	Root	12.040

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	15.854
SRR8749028	MeJA induced 9h	26.583
SRR8749029	MeJA induced 9h	42.263
SRR8749030	Uninduced	53.581
SRR8749031	Uninduced	109.477
SRR8749032	Uninduced	89.781

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	22.222
SRR8400027	Control - Root	16.779