Gene detail

Gene detail information of Glyur000380s00017146

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G26744.4	7.00E-74	basic helix-loop-helix (bHLH) DNA-binding superfamily protein
NR	ACN21648.1	1.53E-151	putative basic helix-loop-helix protein BHLH23 [Lotus japonicus]
Swissprot	tr\|Q9LSE2\|ICE1_ARATH	6.00E-112	Transcription factor ICE1
trEMBL	tr\|C0JP29\|C0JP29_LOTJA	6.00E-152	Putative basic helix-loop-helix protein BHLH23 {ECO:0000313\|EMBL:ACN21648.1}

Sequence

Transcript Sequence

>Glyur000380s00017146.1
ATGGAGAGATACACACTACCCTCGGCACCACCACCAACAACAACAGTTCACAACACCCACACCGTAATTCCTTGGACGACGGAACCACCACATGCCGAAGACATTGCCGAAACCGCAGCCTCGTGGACCACACCTATCTCCGAACCTAAACACCACCCTCTCCTCCCTTTCTTCAAACCCGAACCTGATTACTACTACTACTACAACAACAACAACTCTTCTTCTATTACAAGCACCACTAGTGACAACAATGTTGTTGTTCCCTTTGTTTCAAATTCAAACCCAACAACAACAACAACGACGACGACGACGACGACGACCCATAACAACAACAACTTTCTCATGCACCAAAACACCAACAACAACATGGATTCTTTCCCTCTCGAATCACAACCACACCCATTCTTCAACAATTACAGTAACAATAACCCTTTTGAGACGGGATTCGAAAGTGGGTTCTTTTCCACTGTTAATTTGATGGGTCTGAGTTCGGCCACCGAGTTGTTGTTCCCCCCTCCGAGTCTCGAACTCGGAGGAGGAGCCTCCTTTGATGCTCCGTTAGTAGCGCNGCAACAACCCACGCTGTTCCAGAAGCGGCGAGGGACGTTGGAGATTCCGAGGTTGGAGACTGGGAAGAAGATTAAGAATGTTGGTGTTGTTGATGATGTTGATGTTGATGATTCGGGGTTGAACTTGTATGACTCTGATGAGAATGAGAATGAGAATGAGAATGGGAGTGGTTTGAACAACAATCAGAATGGAAATGGTGGTGGTGGGGACCACAGGGGGAAGAAGAAGAAGGGGCTCCCCGCGAAGAATCTCATGGCAGAGAGGCGCCGTAGGAAGAAACTCAATGACAGGTTGTACATGCTTAGATCTGTTATGGATAGGGCTTCAATACTTGGGGATGCAGTTGACTACTTGAAGGAGCTACTGCAGAGGATTAATGATCTTCATAATGAGCTGGAATCAACTCCACCTGGCTCATTGCTGCCACCACCCTCTGCAAGCTTTCACCCGTTGACGCCCACTCCACCAACCCTTCCATGTCGAGTCAAGGAGGATCTGTATCCTGGTTCCTTGCAAAGCCCTAAAAACCAACCCGCAAAGGTGGAAGTTAGGGTAAGGGAAGGGAGAGCTGTCAACATTCACATGTTTTGCAGCCGCAGACCAGGACTTTTGCTTTCTACCATGAGGGCTTTGGATNACCTCGGATTGGATGTTCAGCAGGCTGTTATTAGCTGTTTCAATGGCTTCGCTTTAGATGTGTTCAGAGCTGAGCAATGCAGAGAAGGTCAGGATGTGCTCCCTGAGCAAATTAAAGCAGTGCTCTTGGATTCAGCAGGATTCCACGGTATGACGTGATTGAAGTTCTCAATAAATGCTACCCTTATAGAGGTACTAACTGTAGAGCTGCTGTTCGTAAATGAATCGCGTCGCGTCTTGTTACCATTCGTATAAGCCTGCTTGTCCAGGCCAAGATCAAATAGGTTAGCTCAATCTGTAGGTCTGATAGTTTTCTCAATCGTTGTTATGGCAGAAGCAAACTTATGTTGGTAACTTTATGATTTANGTGGTGGAATAAATT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00380	140655	144390	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0046983 protein dimerization activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--	--

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.013
SRR1783600	control	1.961
SRR1783602	moderate drought stress	2.822
SRR1811619	moderate drought stress	2.690

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.619
DRR006520	Root Summer glycyrrhizin high producing strain	3.599
DRR006521	Root Winter glycyrrhizin high producing strain	0.772
DRR006522	Root Winter glycyrrhizin high producing strain	0.597
DRR006523	Root Summer glycyrrhizin low producing strain	4.948
DRR006524	Root Summer glycyrrhizin low producing strain	4.658
DRR006525	Leaf Summer glycyrrhizin high producing strain	30.975
DRR006526	Leaf Summer glycyrrhizin high producing strain	31.040

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.618
SRR2868004	Drought Stress (root)	2.483
SRR2967015	Control (root)	2.733

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	23.843
SRR9715740	Leaf	34.096
SRR9715741	Leaf	20.950
SRR9715739	Root	2.053
SRR9715742	Root	2.711
SRR9715743	Root	2.101

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	11.821
SRR8749028	MeJA induced 9h	7.110
SRR8749029	MeJA induced 9h	4.763
SRR8749030	Uninduced	2.135
SRR8749031	Uninduced	1.885
SRR8749032	Uninduced	4.511

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.029
SRR8400027	Control - Root	3.071