Gene detail

Gene detail information of Glyur000380s00017144.2

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G13280.1	0	aspartate kinase 1
NR	XP_003553303.1	0	PREDICTED: aspartokinase 1, chloroplastic-like isoform X1 [Glycine max]
COG	YP_001996257.1	4.00E-88	aspartate kinase III [Chloroherpeton thalassium ATCC 35110]
Swissprot	tr\|Q9LYU8\|AK1_ARATH	0	Aspartokinase 1, chloroplastic (Precursor)
trEMBL	tr\|I1N803\|I1N803_SOYBN	0	Aspartokinase {ECO:0000256\|RuleBase:RU003448}

Sequence

Transcript Sequence

>Glyur000380s00017144.2
ACAAAAAGCCCAAAACCCATTTCCAAATCCTAATTACTTTCCTTTAATTAATCCGAAATAAGTCACAACCTTTGTTGTTGTTGCATTGGGATTGGAATCGATGGACCCTCCGTCTCAACTCTTCCTTGCTTTGAGAGCCTTTGACTGCATTAATGCTCAATTTTTGTCTTAGTTAAAGAATGCCATAGACGATGCTTCCAGATTATAATAGATGCACTGCGAACCAAGAATCAAGCTTTGGAAGAAACAGATAATAATTGTGAAAAGAATTTGTTTCGTTTACATTATTATATATATTGTTTTTGGAAGAAGTAACTTACATTGGAATATATAAGCATGGCAAGCATGACGATGCAATTTGGTTGGGTTAAGAGCACATTCCCTGTGGCTTTGAAGAGAACCTTGCATTGCGAGCCTCTGTTGTTGCCGTGTCGAATTGNGCTTGCAGCACGTGTTTCTCACGTCAGTTGTGCGAGGACAGTTTCACCAAGTGAGAAGAAGGTGGCACTCAGAGTCAGTTGCTGCAGCAAGGCGACGGAAAGTGATGCTGTGGTGGTGGTGGAGAAGGAGGAGGAGGAGGAGGAGGAAACTGAAAAGAGTTACACATGTGTCATGAAGTTTGGTGGATCCTCCGTGGCCAATTCAGAGAGGATGAGAGAGGTTGCAAACCTTATACTAAGCTTTCCCGAAGAGAGGCCTATAATTGTTCTCTCTGCCATGGGAAAGACAACAAACATGCTTTTACTGGCTGGAGAGAAAGCTGTGAGCTGTGGAGTTACTAATGCCGATAGTATTGATGAGTTGAGCATTATACAAGACCTGCATCTCAGGACGNTGGAGGAACTTGGAGTGGACAGAAATGTTGTTGCAAAACATCTAGAAGAACTGGAGCAACTTCTGAAGGGGATAGCCATGATGAAAGAATTGACTCCACGGACTCAAGACTATTTAGTTTCATTTGGAGAGTGCATGTCCACTAGGATCTTTGCTGCATATCTTAATAAAATAGGTGTTAAGGCTCGCCAATATGATGCATTTGAGATGGGTTTTATAACAACTGATGACTTCACAAATGCGGACATTTTGGAAGCAACATATCCCACTGTTGCAAAGAGGTTACATAGTGATTGGGTTTCTGATCCTGCAATTCCAATTGTTACGGGCTTCCTTGGAAAGGCCCNGAAATCATGTGCAGTGACAACATTGGGTAGAGGAGGTAGTGATTTGACAGCTACAACAATTGGAAANGCACTAGGATTGCCAGAGATCCAGGTATGGAAANATGTTGATGGTGTTCTAACATGTGATCCAAATATATGTCCACAAGCAGAACCTGTTCCATATTTGACGTTTGATGAGGCTGCTGAACTTGCATACTTTGGTGCTCAGGTCTTGCATCCACAGTCTATGAGACCTGCTAGAGAAGGTGATATCCCTGTTAGGGTTAAAAATTCTTACAACCCTAAAGCTCNGGGTACCCTAATCACCAAAACAAGAGATATGAGCAAGGTATTATTAACTAGCATTGTTTTGAAACGTAATGTTACCATGTTGGATATTGTAAGCACTCGCATGCTTGGTCAGTTTGGGTTCCTTGCTAAGGTGTTTTCAATCTTTGAAGATTTAGGCATATCAGTTGATGTTGTAGCTACAAGTGAAGTCAGTATTTCCTTGACACTGGATCCATCAAAGCTGTGGAGCAGAGAGCTAATTCAACAGGAACTTGACTATGTTGTTGAAGAACTGGAAAAAATTGCTGTGGTAAATCTCCTAAAGAATAGATCCATAATCTCTCTCATTGGAAACGTTCAGAGGTCATCACTAATATTGGAGAAGGCCTTTCACGTTCTCCGAACCCTTGGGGTCACGGTTCAAATGATTTCTCAGGGTGCATCTAAGGTGAATATCTCATTGGTTGTAAACGACGGTGAAGCAGAGCAGTGTGTCAAGGCTCTCCATAAANCCTTCTTTGAGTGTGAGATCTCTGAATTGGAGAATGAATGCATACCTGGAAATGGTTCTGTTCCTGCATTATCTTAGGGAAGGATACTATCAAGTTCTTTTAGCAATACTGCACTCTTTTAATTTAGATCTAGCAGATATATACATATATAGAAAAAATTTGGTTGGGACTTGGGAGGAATNAAGGATGTATCAGTGCATATGTACTATTCCAGTTATTTCTAGTCATACCTTGGTATTTTTTGAAGCAATATTTTAGGGTCT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00380	129183	138509	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00928	lysC	EC:2.7.2.4	2-Oxocarboxylic acid metabolism	map01210
			2-Oxocarboxylic acid metabolism	map01210
			Biosynthesis of amino acids	map01230
			Biosynthesis of amino acids	map01230
			Glycine, serine and threonine metabolism	map00260
			Glycine, serine and threonine metabolism	map00260
			Cysteine and methionine metabolism	map00270
			Cysteine and methionine metabolism	map00270
			Lysine biosynthesis	map00300
			Lysine biosynthesis	map00300
			Monobactam biosynthesis	map00261
			Monobactam biosynthesis	map00261

Gene Ontology

biological_process

GO:0008152 metabolic process

GO:0008652 cellular amino acid biosynthetic process

molecular_function

GO:0004072 aspartate kinase activity

GO:0016597 amino acid binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000380s00017144.2	PF00696.23	AA_kinase	90	372	6.40E-48

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.865
SRR1783600	control	1.913
SRR1783602	moderate drought stress	1.712
SRR1811619	moderate drought stress	1.695

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	7.034
DRR006520	Root Summer glycyrrhizin high producing strain	6.993
DRR006521	Root Winter glycyrrhizin high producing strain	7.179
DRR006522	Root Winter glycyrrhizin high producing strain	7.020
DRR006523	Root Summer glycyrrhizin low producing strain	4.625
DRR006524	Root Summer glycyrrhizin low producing strain	4.608
DRR006525	Leaf Summer glycyrrhizin high producing strain	5.491
DRR006526	Leaf Summer glycyrrhizin high producing strain	5.501

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	11.108
SRR2868004	Drought Stress (root)	11.156
SRR2967015	Control (root)	11.017

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	8.661
SRR9715740	Leaf	11.872
SRR9715741	Leaf	9.869
SRR9715739	Root	1.169
SRR9715742	Root	4.585
SRR9715743	Root	5.273

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	11.757
SRR8749028	MeJA induced 9h	10.184
SRR8749029	MeJA induced 9h	7.604
SRR8749030	Uninduced	4.625
SRR8749031	Uninduced	5.464
SRR8749032	Uninduced	6.171

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	12.495
SRR8400027	Control - Root	12.909