Gene detail information of Glyur000380s00017141 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G26740.1 | 9.00E-21 | CCR-like |
| NR | AFK49621.1 | 1.97E-67 | unknown [Lotus japonicus] |
| Swissprot | tr|Q03200|LIRP1_ORYSJ | 5.00E-20 | Light-regulated protein (Precursor) |
| trEMBL | tr|I3TAS9|I3TAS9_LOTJA | 7.00E-68 | Uncharacterized protein {ECO:0000313|EMBL:AFK49621.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00380 | 107256 | 109191 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000380s00017141.1 | PF07207.6 | Lir1 | 1 | 136 | 8.40E-48 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.034 |
| SRR1783600 | control | 0.035 |
| SRR1783602 | moderate drought stress | 8.802 |
| SRR1811619 | moderate drought stress | 8.509 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.411 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.407 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 71.483 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 70.675 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.042 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.938 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 292.847 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 291.055 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.120 |
| SRR2868004 | Drought Stress (root) | 0.065 |
| SRR2967015 | Control (root) | 7.812 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 4.938 |
| SRR9715740 | Leaf | 26.725 |
| SRR9715741 | Leaf | 13.853 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.058 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.128 |
| SRR8400027 | Control - Root | 0.016 |