Gene detail

Gene detail information of Glyur000380s00017139.2

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT1G08660.1	MALE GAMETOPHYTE DEFECTIVE 2
NR	XP_004493073.1	PREDICTED: CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 2-like [Cicer arietinum]
trEMBL	tr\|K7MXM5\|K7MXM5_SOYBN	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA19G27546.1}

Sequence

Transcript Sequence

>Glyur000380s00017139.2
CAGCGTGGTAGTTGCACTTCCCTTCCATCTCAAGCAAAGTCGGCGTTCATCAGAGTGTGTGTTTAGCAATAGCAATGAGACAGCACAAGCAGGTATCATCGGCGATCAATAGTAACCGGCAACCGAGGATTCTCTATCTGGTGTTTGCCGCTGCATTATTCTCCATCCTCCTCTTCGCTATCCAATCCTCTTTCTTCGCCGGTTCCCTCTATTCAGATCGCAACTCCCACGCCATTCGCATCTTGTCTCAATTCCAGTCCACTGTTCAACAATGTGTGGCTAACAGGGGACTTGGACTCACTGCTCATATTATTGATCACTGCACATTGATTCTTAAATACCCTGAAGGCACCAACAGCACTTGGTACAATGTGCAGTTTAAAAAATTTGAGCCTTTGGAGTACACGTATGACGTGTGTGAGTCTATCCTATTGTGGGAACAGTATCGTAACATGACCACAGTGTTGACTAGAGAGTATCTCGATGCTCGTCCCGGTGGTTGGTTAGATTATGCTCCACTAAGGATAGCACAATTGGGGACAAAGAAGTGCGATAATAAGACTCTTTGTGAAGAGCACCTCAATATATTATTACCTGCGAAACCCCCCTTTCATCCACGGCAGTTTCGTACTTGCGCTGTTGTTGGGAATTCTGGGGACCTTCTGAAGACAGAATTTGGGGAAGAAATTGATAGTCATGATGCTGTTTTTCGAGACAATGAGGCCCCTGTTAATCAGAAATATGCCAAGTACGTTGGTCTTAAGAGGGATTTCCGTCTGGTTGTAAGAGGTGCTGCTCGAAACATGGTCCCTATTCTAAATGGTTCTGATGACGAGGTACTCATAATCAAAAGTCTGACACACAGAGATATCAATGCAATTATAAAGACTATACCAAATCCAGTCTATCTCTTTCAAGGTATTGTCCTACGTCGAGGTGCCAAAGGAACTGGAATGAAATCTATCGAATTAGCGCTCTCTATGTGTGATATTGTTGATATATATGGTTTCACTGTTGATCCAGGATACACTGAATGGACAAGATACTTCTCTGCTCCTAGGAAGGGACACAATCCACTTCAAGGAAGAGCATACTACCAACTTCTAGAATGTCTTGGGGTAATCAGGATTCACTCCCCCATGAGATCTAAGAGGAGACAAGACTGGTCAGATGTGCCAAGTAGAGAAATGATAAGCCAAGCACATGCAGCAGCTTTGCGCTTGAAAAAGAGTCCAGCTGATCGGGCTGGTGGCGGTTTAGGGCAGTTTGGTAATTGTAAGGTGTGGGGCAATGTGGACCCGGACAAAAGTGGACCTATCTCTGGATCACCCGACATGAGTGACGTCAGGAAGTATTCAAATTATAGTAAATGGGAAGTCATGCCTTTGGAGAGTTTGAGGAAAGAAGCACAGGATCACTATAGCCAGATGCAAGGGGTCTCTCAATATAAAATGGATGGCAACAGGTTGGATGATCTAGTGTGTGTGAGACACTCCTTAAAATCTGAGGTGTAAATGGTGTCTTCTGGTCTATTGTTATTCATTGATCAAGCCCTACTGTCTTCTAATTGGAATCTGGGATAATTTAGCTTCTGAGGGCTGCTGGCGTATAGCTCGCAATTGGCAAATGGTTCCTCCGTTTCATCGCCGAATTCAGAGCATAGCAAGAATCTTGGCCCCATCGAGGGAAAATGTGGGAGTCAATATCTATGATCCGGATGATTTATGTTTCAAGGTGATTCATGGTAGAGATCTAGATATCAAGATATAGGAATTCTGACTACACAAATTTGTTGTGCCTCTTTTCAGGTTTAAAGGGACAGGGCTTAGTCAATAGTATGATAGGTGTCTATCTATTATAATGTATTGATTTGTTGAAGTATCTGCAGAAAAATGTTTTTCTTTATGTGGTGATTATCAACAAAGCCTGTAAAGGAGAAAAGTGATAGTCAAACGATTTTGTAACCGGGTTTCACATGATTTTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00380	98692	105366	+

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GT29

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006486 protein glycosylation

molecular_function
GO:0008373 sialyltransferase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000380s00017139.2	PF00777.13	Glyco_transf_29	157	242	1.00E-25
Glyur000380s00017139.2	PF00777.13	Glyco_transf_29	251	354	2.50E-12

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	13.907
SRR1783600	control	14.059
SRR1783602	moderate drought stress	11.070
SRR1811619	moderate drought stress	11.168

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	20.231
DRR006520	Root Summer glycyrrhizin high producing strain	19.960
DRR006521	Root Winter glycyrrhizin high producing strain	32.458
DRR006522	Root Winter glycyrrhizin high producing strain	31.805
DRR006523	Root Summer glycyrrhizin low producing strain	22.367
DRR006524	Root Summer glycyrrhizin low producing strain	22.416
DRR006525	Leaf Summer glycyrrhizin high producing strain	14.052
DRR006526	Leaf Summer glycyrrhizin high producing strain	14.061

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	29.445
SRR2868004	Drought Stress (root)	24.005
SRR2967015	Control (root)	25.176

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	12.154
SRR9715740	Leaf	11.619
SRR9715741	Leaf	11.702
SRR9715739	Root	4.138
SRR9715742	Root	14.256
SRR9715743	Root	12.591

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	34.155
SRR8749028	MeJA induced 9h	34.352
SRR8749029	MeJA induced 9h	39.731
SRR8749030	Uninduced	38.534
SRR8749031	Uninduced	51.608
SRR8749032	Uninduced	41.237

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	23.026
SRR8400027	Control - Root	23.193