Gene detail

Gene detail information of Glyur000380s00017132.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G13980.2	0	Glycosyl hydrolase family 38 protein
NR	AES80719.2	0	glycoside hydrolase family 38 amino-terminal domain protein [Medicago truncatula]
COG	YP_001535983.1	1.00E-06	glycoside hydrolase family protein [Salinispora arenicola CNS-205]
Swissprot	tr\|C0HJB3\|MANA_CANEN	0	Alpha-mannosidase, light subunit {ECO:0000303\|PubMed:24221485}
trEMBL	tr\|G7KX95\|G7KX95_MEDTR	0	Alpha-mannosidase {ECO:0000256\|RuleBase:RU361199}

Sequence

Transcript Sequence

>Glyur000380s00017132.1
AAAAACATGTATCGCAAGCATTTCTATTTTCTTCCTATTTCCTTTCTTCCCTTACACTGCAAGCTCAAGCTTGCTAGCTAATTCTAAATTCAGTAACAATATAAAACAGAAACTCAGAAAAACCACTGCATAATCGGTTAGTGTTGTAGTGACCACACAGTGTCAGTGTCGATGGCGAAAACGGCGGTGCTATTCGCCGTTTTGGTGACGGCGATTTGGGTAGCGGGATCAGAGTACATAGANTACAACACGACGCAGAGGATCGTACCCGGCAAAATAAACGTGCACTTGGTGCCTCACTCCCACGATGACGTTGGCTGGCTCAAGACCGTCGATCAGTACTACGTTGGTGCCAACAACTCCATTCGGAACGTGCTGGATTCTGTGATATCTGCACTCTTGGAGGATAAGAATCGCAAGTTTATCTATGTTGAGATGGCATTTTTCCAGAGATGGTGGAGGCAGCAAAGTAAAGCTATGAAAGTTAAAGTCAAGGAGCTTGTCAACTCGGAAATGGTGGCCACCCCGCATTACATTGACCTGATTGATCAGACCACTCTTGGGCATCAATTTATCAAAGATGAATTTGGTAAGATTCCAAGAGTTGGCTGGCAGATTGATCCGTTTGGCCATTCTGCAGTTCAGGCTTACTTGCTTGGTGCTGAGCTAGGATTCGATTCACTCTTTTTTGCTAGAATTGATTACCAAGATAGAGCCAAGCGATTAAAGGAGAGGACTCTAGAGGTTGTTTGGCAGGGTTCCAAGTCTCTTGGTTCTTCTTCACAAATATTCACTGGGATATTTCCTAGGCATTATGATCCACCTGATGGTTTCACGTTTGAGATAAATGATGTTTCCCCTCCTATTCAGGATGACATTCTACTGTTTGACTATAATGTTGAAGAAAGAGTCAANGACTTTGTATCTGCTGCCTTAGCTCAGGCTAATGTGACCAGAACAAATCACATTATGTGGACAATGGGAACAGACTTCCGTTATCAATATGCTAATTCATGGTTTAGGCAGATGGATAAGTTTATTCACTATGTCAATCAGGATGGGCGTGTCAATGCATTATATTCCACACCATCTATCTACACTGATGCAAAGCATGCAGCTAATCAGCAATGGCCTCTTAAAATTGATGATTTCTTCCCGTATGCAGATCATCCAAATGCATATTGGACTGGTTATTTTACAAGTAGGCCAGCTTTAAAGGGTTATGTGCGAACGATGAGTGGTTACTATCAGGCAGCAAGGCAATTGGAATTTTTTAAAGGANGGAATGAATCGGGACCACATACTGGTGCATTGGCTGATGCTTTGGCAATTGCTCAGCACCATGATGCTGTTAGTGGCACAGAGAGACAGCATGTTGCTGCTGATTATGCAATGCGGCTCTCAATAGGCTATGCAGAGGCAGAAGATTTGGTTGCTTCTGCACTTGTGTTCTTGTGTCCTCTTCTTAATATAAGCTACTGTCCTCCGTCNGAAGCTACCTTGGCTAATGGAAAAAGCATGGTTTCCACTGGAGAGGTTTTTGTCCAGGATTCTGCTGGGAAGGAAATTGAGTCTCAGCTTCTGCCTCTATCTAATGCTACTTTGAACATAAGAAACAAATATGTCAAANCATATATAGGAAAAGCTCCTGCTGGGGAACTTAAGTATTGGCTTGCATTTCCTGTGTCTGTACCTCCCCTTGGTTTCAGCACCTACATAGTGTCCAGGCCTAAAAAGACGGGTCATAGTTCAACTATCTCAAAGGTGTATAGCTCAGAAGGAAGTACAAATGATAGCATAGAAGTTGGACAAGGGAATTTAAAGCTACTTTATTCTGCAGATGAAGGAAAATTGACTCATTATGTTAACAGTAGAAATCTGGTCACAGCATCAGTTGAACAATCATACAGTTATTATTCTGGAAACGATGGGACTGATAAAGATCCTCAGGCTTCTGGGGCGTACGTCTTCCGTCCAAATGGCTCATTTCCCATTAAATCTGATCGCCAGGCGTCTTTCACTGTTCTGCATGGTCCAATATTGGATGAAGTACATCAACAGCTAAATCCATGGGTGTCTCAGATTGGGCCTATTCCTGTGGATGATGGCATTGGGAAAGAAATTATTACTCAATTTACAACAACAATGAAGACCAACAAGACATTCTACACAGATTCTAATGGGCGTGACTTCATTAAAAGGATTCGAGATTTCAGGACAGACTGGGATCTAGAAGTGAACCAACCCATAGCTGGAAACTATTACCCGGTTAATTTAGGAATATATATGCAAGATAGCAGTATGGAACTCTCGGTGTTGGTGGACCGCTCATTTGGGGGTTCCAGCTTGGAAGATGGTCAAGTAGAGCTTATGCTCCACAGGAGGTTGCTTCATGATGATGCAAGAGGTGTTGGTGAGACACTTAATGAAACAGTTTGCGTTGCTAATAACTGTGAAGGCTTAACCATTCAAGGAAAACTGTACCTTAGAATTGACCGTAAAGGTGAAGGTGCTANATGGCGTCGTACAGTTGGCCAGGAATTATATTCACCATTGCTGTTGGCCTTCTCGGAGCAGGATGGGGACAATTTGTTACATTTCCAATCATCAACATTTTCTGGCATAGATTCTTCCTACAGTTTACCAAACAACACTGCTCTTCTAACCCTCCAGGAATTTGGAAATGGAAAAGTTGGAGAGGACAAAGATTACTCAGTAACAGCAAGTGTGGAATTGAAAAAGNTTTTCCCTAACAAGAAGATAAGTAAAGTGACAGAGATGAGTTTGTCTGCTAATCAAGAAAGAGCTGAAATGGAAAAGAAGAAATTAGTCTGGAAGGTAGAAGGCTCCACCACTGAAGAACCTAAGGTGGTGAAGGGAGGACCTGTTGATCNTACAGAGCTGGTTGTTGAACTTGCCCCAATGGAGATTAGGACATTCTTTATTGACTTCAATCCCCTCCNAACAGTTCCTGCAGCAGAAACTCATGTAGCAATGAGTAAAAAAATAAAAAACGCTACTCGTGATTTTCAGCATCATCCAATGGCGAAAAATTTGATCTTTTTGTTGACCCTTTTGGGGATACTACTTTTTGGGGAACCCAAGTATATGGGTATAGTTTCTGGGAAGCTCAATGTTCATCTGGTTGCTCATACCCATGATGATGTTGGGTGGTTGAAGACCGTTGATCAGTACTATGTTGGTTCTAACAATTCTATTCAGGGGGCTTGCGTGCAAAATGTGTTGGACTCCATGGTTCATGCTCTATTGGCTGATAAGAACCGGAAATTTATCTACGTGGAGATAGCCTTTTTCCAGCGATGGTGGAGAGATCAGAGCGAAACTGTTCAGGATGTAGTTAAGCAACTTGTTAGCTCGGGTCAACTAGAGTTCATAAATGGGGGCATGTGTATGCATGATGAGGCAGTAACTCATTACATAGACATGATTGATCAGACTACGCTTGGACATCGATTTCTGAAAGAGGTGTTTGGTGTGACTCCCAGAATTGGTTGGCAAATTGATCCCTTTGGACACTCTGCTGTGCAGGCTTACTTGTTGGGAGCTGAAGTTGGCTTTGACTCACTTTTCTTTGGTAGGATAGATTACCAAGATAGGGCTAAACGCAAAAAGGAGAAGAGTCTTGAGGTTATCTGGCAGGGTAGCAAGAGCCTTGGCTCATCTTCCCAGATCTTTGCTGGTGCATTCCCTGAGAATTATGAGCCTCCTCCTGGAGGATTTTATTTTGAAGTTAATGCTGAATCGCCAATAGTCCAAGATAACATGGATTTGTTTGATTACAATGTGGAAGATCGAGTGAATGACTTTGTTGCTGCTGCATTATCACAGGCAAATATAACTCGAACAAATCACATAATGTGGACAATGGGAACTGATTTTAAGTACCAATATGCACATACATGGTACCGACAGATGGACAAGCTTATTCATTACGTAAACAAGGATGGACGTGTCAATGCTCTGTACTCTACGCCATCCATATATACTGATGCAAAATATGCTACAAATGAGTCCTGGCCAATCAAGACTCATGATTACTTCCCTTATGCAGATCGTGCAAATGGTTACTGGACAGGATACTTTACCAGTAGGCCAGCTCTCAAACGCTNTGCTGCAAGACAACTAGAATTCTTCAGAGGGAGAATGAAATCAGGGCCAAATACAGACTCATTAGCTGATGCTTTAGCAATTGCTCAACACCATGATGCAGTCACTGGCACTGAAAAGCAACATGTGGCCAATGATTATTCTAAACGATTGTCAATAGGCTACAAGGAGGCAGAGGAACTGGTTTCATCATCACTAGCTTCCTTGGTTGAGTCAACGTCATTTACTGGATGTCAGAACCCAGTTACAAAGTTTGAACAATGTCCACTTTTGAACATAAGCTACTGTCCTGCATCAGAAGTTGATCTGGCTCAAGGAAAGAGTTTGGTTATTGTGGTTTACAACCCTCTTGGTTGGAGGAGGAATGAAGTGATTCGAGTTCCTGTTATCGATGGAAATGTTACAGTTCATGACTCTAACGGTATAGAAATAGAATCTCAAATTCTTCCTCAGTCTGAGGTATATGTAGACTTGAGAAACTACTATGTCAAGGCATATTTAGGACAAACTCCACCCAAGGCACCCAAGTATTGGCTTGCATTTACAGTTTCTGTACCACCATATGGTTCCACCAGATCATCAGTATATACATATCAAAGTCATGAAAAGTCTAGATTTGAAGTTGGTCAAGGAAGTTTGAAGCTCACATTTTCTTCAGATCAAGAAAAACGTACCAATTATGTTAATACAAGAAACTTGGTTGAGGAACAGGTTGAACTGAGTTACCTTTACTATTCAGGATATAATGGAACTAATCAAAAAGATCCACAGAATTCTGGGGCCTACATCTTCCGTCCAAATGGCACATATCCCATAAACCATGAAAGACAGGTTCCAGTGACTGTTCTGCATGGACCAATATTGGATGAAGTGCATCAACAAATCAATCCATGGATATATCAGATTACCAGACTGCACAAAGGAAAGGAGCATGTTGAAGTAGAGTTTATTGTTGGACCTATACCTATTGAAGATGGAATTGGTAAAGAAGTTGCCACTCAGATTTCAACTACTATGCAAACCAATAAAACATTTTACACAGATTCTAATGGGCGTGATTTTATCAAAAGGATACGTGACTACAGAGAAGACTGGAACCTGGAAGTGAACCAGCCCATTGCTGGAAATTATTACCCTATTAATCTTGGGATATACATGAAAGATAATAAGACAGAATTCTCAGTTTTGGTGGATAGATCTATCGGAGGATCCAGCTTAGAAGATGGACAAATAGAGCTGATGGTCCACAGGAGATTGCTACTTGATGATTCAAGAGGTGTCCAAGGTAAATATTACTATAGAATAGATCCCTTGGGTGAGGGAGCTAAGTGGCGCCGTANTTTTGGCCAGGAAATATATTCTCCACTTCTGTTAGCCTTTTCTGAAAAGGATGATAAAGATGACTGGATGAATACCCATGTAACAACATTTTCAGGAATTGACTCTTCTTACACATTACCAGAAAACGTTGTTATTATAACCTTACAGGAACTTGACGATGGGACAGTTCTCCTTCGATTAGCGCATTTATANGAGATTGAAGAAGACAAGGATCTCTCTGTAATGACAAGTGTGGAGTTGAAAAAGCTCTTCCCTGNGAAGAAGAAGAAAAGACTTGTTTGGAAAGTGGAAGGAGGGTCCTCTGCAAATGGAGGTGTTTCAAGGGGAGGGCCAGTTGATCCAAAAGAGCTAAATGTGGAGCTTGCTCCAATGGAAATCCGCACTTTCATCATTTACTTTGATGATAACCATCTTTTTGATGCATTGTTTCTTGTGGCTTGCTTGGCTTGGCTTTCTCATCCCTCCTTCCATCAAAGTGTCTGTAGTATTGCAAAGGTTGCAGGATTTCTGTGGTGGATGTTGTGGGCTATGGTCAAGGAGATCTTAGGTGATCTGAGTCAAATTGTAGAGCTAAATAATACACTTATCATCGTCGCCCCAAAG

Protein Sequence

>Glyur000380s00017132.1
MAKTAVLFAVLVTAIWVAGSEYIXYNTTQRIVPGKINVHLVPHSHDDVGWLKTVDQYYVGANNSIRNVLDSVISALLEDKNRKFIYVEMAFFQRWWRQQSKAMKVKVKELVNSEMVATPHYIDLIDQTTLGHQFIKDEFGKIPRVGWQIDPFGHSAVQAYLLGAELGFDSLFFARIDYQDRAKRLKERTLEVVWQGSKSLGSSSQIFTGIFPRHYDPPDGFTFEINDVSPPIQDDILLFDYNVEERVXDFVSAALAQANVTRTNHIMWTMGTDFRYQYANSWFRQMDKFIHYVNQDGRVNALYSTPSIYTDAKHAANQQWPLKIDDFFPYADHPNAYWTGYFTSRPALKGYVRTMSGYYQAARQLEFFKGXNESGPHTGALADALAIAQHHDAVSGTERQHVAADYAMRLSIGYAEAEDLVASALVFLCPLLNISYCPPSEATLANGKSMVSTGEVFVQDSAGKEIESQLLPLSNATLNIRNKYVKXYIGKAPAGELKYWLAFPVSVPPLGFSTYIVSRPKKTGHSSTISKVYSSEGSTNDSIEVGQGNLKLLYSADEGKLTHYVNSRNLVTASVEQSYSYYSGNDGTDKDPQASGAYVFRPNGSFPIKSDRQASFTVLHGPILDEVHQQLNPWVSQIGPIPVDDGIGKEIITQFTTTMKTNKTFYTDSNGRDFIKRIRDFRTDWDLEVNQPIAGNYYPVNLGIYMQDSSMELSVLVDRSFGGSSLEDGQVELMLHRRLLHDDARGVGETLNETVCVANNCEGLTIQGKLYLRIDRKGEGAXWRRTVGQELYSPLLLAFSEQDGDNLLHFQSSTFSGIDSSYSLPNNTALLTLQEFGNGKVGEDKDYSVTASVELKKXFPNKKISKVTEMSLSANQERAEMEKKKLVWKVEGSTTEEPKVVKGGPVDXTELVVELAPMEIRTFFIDFNPLXTVPAAETHVAMSKKIKNATRDFQHHPMAKNLIFLLTLLGILLFGEPKYMGIVSGKLNVHLVAHTHDDVGWLKTVDQYYVGSNNSIQGACVQNVLDSMVHALLADKNRKFIYVEIAFFQRWWRDQSETVQDVVKQLVSSGQLEFINGGMCMHDEAVTHYIDMIDQTTLGHRFLKEVFGVTPRIGWQIDPFGHSAVQAYLLGAEVGFDSLFFGRIDYQDRAKRKKEKSLEVIWQGSKSLGSSSQIFAGAFPENYEPPPGGFYFEVNAESPIVQDNMDLFDYNVEDRVNDFVAAALSQANITRTNHIMWTMGTDFKYQYAHTWYRQMDKLIHYVNKDGRVNALYSTPSIYTDAKYATNESWPIKTHDYFPYADRANGYWTGYFTSRPALKRXAARQLEFFRGRMKSGPNTDSLADALAIAQHHDAVTGTEKQHVANDYSKRLSIGYKEAEELVSSSLASLVESTSFTGCQNPVTKFEQCPLLNISYCPASEVDLAQGKSLVIVVYNPLGWRRNEVIRVPVIDGNVTVHDSNGIEIESQILPQSEVYVDLRNYYVKAYLGQTPPKAPKYWLAFTVSVPPYGSTRSSVYTYQSHEKSRFEVGQGSLKLTFSSDQEKRTNYVNTRNLVEEQVELSYLYYSGYNGTNQKDPQNSGAYIFRPNGTYPINHERQVPVTVLHGPILDEVHQQINPWIYQITRLHKGKEHVEVEFIVGPIPIEDGIGKEVATQISTTMQTNKTFYTDSNGRDFIKRIRDYREDWNLEVNQPIAGNYYPINLGIYMKDNKTEFSVLVDRSIGGSSLEDGQIELMVHRRLLLDDSRGVQGKYYYRIDPLGEGAKWRRXFGQEIYSPLLLAFSEKDDKDDWMNTHVTTFSGIDSSYTLPENVVIITLQELDDGTVLLRLAHLXEIEEDKDLSVMTSVELKKLFPXKKKKRLVWKVEGGSSANGGVSRGGPVDPKELNVELAPMEIRTFIIYFDDNHLFDALFLVACLAWLSHPSFHQSVCSIAKVAGFLWWMLWAMVKEILGDLSQIVELNNTLIIVAPK

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00380	31003	61486	+

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GH38

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01191	E3.2.1.24	EC:3.2.1.24	Other glycan degradation	map00511

Gene Ontology

biological_process

GO:0005975 carbohydrate metabolic process

GO:0006013 mannose metabolic process

molecular_function

GO:0003824 catalytic activity

GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds

GO:0004559 alpha-mannosidase activity

GO:0008270 zinc ion binding

GO:0015923 mannosidase activity

GO:0030246 carbohydrate binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000380s00017132.1	PF01074.17	Glyco_hydro_38	37	331	1.90E-71
Glyur000380s00017132.1	PF09261.6	Alpha-mann_mid	337	410	7.20E-19
Glyur000380s00017132.1	PF07748.8	Glyco_hydro_38C	451	923	1.20E-68
Glyur000380s00017132.1	PF01074.17	Glyco_hydro_38	988	1300	1.70E-86
Glyur000380s00017132.1	PF09261.6	Alpha-mann_mid	1306	1370	6.30E-13
Glyur000380s00017132.1	PF07748.8	Glyco_hydro_38C	1430	1896	3.40E-87

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	18.893
SRR1783600	control	19.290
SRR1783602	moderate drought stress	18.451
SRR1811619	moderate drought stress	18.990

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	18.898
DRR006520	Root Summer glycyrrhizin high producing strain	18.533
DRR006521	Root Winter glycyrrhizin high producing strain	7.964
DRR006522	Root Winter glycyrrhizin high producing strain	7.852
DRR006523	Root Summer glycyrrhizin low producing strain	16.694
DRR006524	Root Summer glycyrrhizin low producing strain	16.620
DRR006525	Leaf Summer glycyrrhizin high producing strain	10.756
DRR006526	Leaf Summer glycyrrhizin high producing strain	11.042

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	35.422
SRR2868004	Drought Stress (root)	34.865
SRR2967015	Control (root)	35.282

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	14.757
SRR9715740	Leaf	15.635
SRR9715741	Leaf	18.037
SRR9715739	Root	2.465
SRR9715742	Root	14.576
SRR9715743	Root	12.899

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	34.509
SRR8749028	MeJA induced 9h	27.699
SRR8749029	MeJA induced 9h	26.027
SRR8749030	Uninduced	11.887
SRR8749031	Uninduced	8.869
SRR8749032	Uninduced	10.900

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	30.689
SRR8400027	Control - Root	29.666