Gene detail

Gene detail information of Glyur000379s00015031

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G13730.1	3.00E-88	sigma factor 4
NR	XP_004499937.1	0	PREDICTED: RNA polymerase sigma factor sigD, chloroplastic-like [Cicer arietinum]
COG	YP_002522472.1	1.00E-46	RNA polymerase sigma factor rpoD [Thermomicrobium roseum DSM 5159]
Swissprot	tr\|Q9ZSL6\|SIGD_ARATH	2.00E-105	RNA polymerase sigma factor sigD, chloroplastic (Precursor)
trEMBL	tr\|G7J0X0\|G7J0X0_MEDTR	0	RNA polymerase sigma factor {ECO:0000313\|EMBL:AES69690.1}

Sequence

Transcript Sequence

>Glyur000379s00015031.1
TAAGACGTGGCACTACTAAAAGATACTTTCTCAACTTTGTCAATCAGAACAGAAATATCTGCATGTTCATCTTTTTTTTTTTATGGGGCCAAAAGAAGTATAAGCAATAGCCAATTATTCTTCTTATTCTATGGCCATAGCAAGGTTAACATGCTCATCCCCATGTCTCTTACTTCACTTCCAACCTTCCCAACGCTTAAGANACACCCTTCCCTTCAAGTTCAACCCACTTTGCCCACTGCTCCCTCCAAGTTTGGTACAACTTTGGTTTCTAGTGATCATGTACCAGTCATTGCTGCAGCAACAGAAGCAGTTGCACTGGCCAATGCTGCTGTGGAGGCAGCTAGAGATGCTGTGTCTGCAGCTGCTGGAATTGGAAANGAGTGGCCTTTTGTAGAGAGTGAAAATGGGGTGGTTGTAAGAGATAGGAGCATAGGATTTGACNNGAGGAGGAAGAGGAGGAGGAGAAAAAGAAGAAAAGATTTGGGATGTTTGGAAGAAGAAGAGAATCAGATTCAGAACAACTGCTCAAGGCTGAAACTACTTGTTGGGTCTGCAACAGCTGGGTTCTTGAGTTCAACAGAAGAGGCTGAGCTTTGTTTAGGTCTCAAGGAGGGGGCAAGGATTGAAGTTTCTAAGTTAAGAATCACAGAACTTGAAGGGAACCCTACNATTTCAAGGAAGTTTGCTCATGGTAATACAAGTCTGGATAAGGTCTTGTGTACTACAAAAGAGTCAAGAGAAAGATTAATTCGTGAGTATCGGGGGTTAGTTACCTCCATTGCAGCTGGTTATAAAGGCAAAGGATTAAGCCTTCATGAGCTTATTCAGCTCCTTCTTAGGTATTTTAATCCATTTTACCAGGAAGGAACCATTGGACTTCTGCAAGGAGTAGAGAAATTTGACCCAAATAGAGGATGTAAGCTGTCCACTTATNTTTACTGGTGGATCAAACAAGCCATCATTAAAGCCGTGGCAATGAAGTGCAGATTAGTCAGATTGCCGGGAAACAAGTGTCAGATGGTTGCAAAAGTTGCAAAGACCAACAATGTCATGAGAAGAAGACTGAGGAGGAAGCCCACATACAATGAAACAGCTGAAGTGCTCAATGTGAATGTTTCCACTGTAAAACTTGTTTCTGAAAGGAGCAGACCACCAATTTCATTGGACAAAGCTGTAACTGACCGTGGCCACTTAACCCTTCAGGAGATTATACCGGGGCCAGTTGAAATGATTCCAGAGAAGATGGTTGAGAGGCAGCTAATGAAGCAGGGGGTGGTGAAGCTTCTTAACATGCTTACCAAGAGGGAAGCAGAGATTGTGATGTTACGGTTTGGACTCAATGGAGAGACCCCTCGGTCTTTTGAGGAGATAGGAAGGCTGTTGAAACTATCAAGGGAGAGAGTCAGACAGATTCATGGCATTGCACTGTCAAAATTGCAACAAACATCTCTTGTAGATAGTCTAAAGTTCTATGTTGTATAGAAAAAAAACATTTTGATGATTATGATTAATGAAAAAGAGAAAGAAAATAAAATCAAGGATATAATGAAGAAAGTGGTTAAAGATGTCAAGGCGGAGCTAGACCATTAAACCTCAAGAACCAAAAAGAAGTAGCACCATTTTTTGGGCNAAGTCGATGGACTTTATTTTAAAAGATGAAAAGAAATTTTAAAGTAAATTTCAGCAGTAATTTTCTGGATCACATGAGCTTCACTTACTTCTACTAATTGAGAATATTACGACGCATACAACATTCTAGTCTGGCTTATGCAGTTTATGAAGGATATACAAAGATGCAGATGATAAGAAAATACAGACTGAACAACTTAGTAAATCCAACCCAGTGGCAATGTGAACCATTTTGCTCCTCTCAAACATTTTCACTAGAAGAATCATGACAATAACATGCTCCACTTTTGTACTTCAATTCATCAAGTGAGCTGATTTTCATCCACTTTGGCCTCTCCTGAAAAGAAGATCACAAGAAATATATATTTATTTTTCAATATCGAAATACATGTGAATGCCGGGTCAATTAATAAGAATAACGAACAAGTTATCTGATATGATCTATAAGTATTATAGAAAAGTCTCAATCTAATCCAAATTACAAACAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00379	174432	178128	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006352 DNA-templated transcription, initiation

GO:0006355 regulation of transcription, DNA-templated

molecular_function

GO:0003677 DNA binding

GO:0003700 transcription factor activity, sequence-specific DNA binding

GO:0016987 sigma factor activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000379s00015031.1	PF04542.9	Sigma70_r2	237	275	1.50E-10
Glyur000379s00015031.1	PF04539.11	Sigma70_r3	293	358	2.50E-07
Glyur000379s00015031.1	PF04545.11	Sigma70_r4	380	431	1.20E-13
Glyur000379s00015031.2	PF04542.9	Sigma70_r2	200	264	2.80E-18
Glyur000379s00015031.2	PF04539.11	Sigma70_r3	282	347	2.40E-07
Glyur000379s00015031.2	PF04545.11	Sigma70_r4	369	420	1.10E-13

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.410
SRR1783600	control	0.479
SRR1783602	moderate drought stress	1.120
SRR1811619	moderate drought stress	1.066

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.577
DRR006520	Root Summer glycyrrhizin high producing strain	1.499
DRR006521	Root Winter glycyrrhizin high producing strain	2.419
DRR006522	Root Winter glycyrrhizin high producing strain	2.791
DRR006523	Root Summer glycyrrhizin low producing strain	2.183
DRR006524	Root Summer glycyrrhizin low producing strain	2.288
DRR006525	Leaf Summer glycyrrhizin high producing strain	47.307
DRR006526	Leaf Summer glycyrrhizin high producing strain	47.503

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.677
SRR2868004	Drought Stress (root)	2.463
SRR2967015	Control (root)	2.300

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.736
SRR9715740	Leaf	3.226
SRR9715741	Leaf	2.371
SRR9715739	Root	0.220
SRR9715742	Root	0.540
SRR9715743	Root	0.533

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.612
SRR8749028	MeJA induced 9h	0.908
SRR8749029	MeJA induced 9h	0.399
SRR8749030	Uninduced	2.674
SRR8749031	Uninduced	0.484
SRR8749032	Uninduced	0.583

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	5.912
SRR8400027	Control - Root	7.024