Gene detail

Gene detail information of Glyur000379s00015029

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G15920.1	0	structural maintenance of chromosomes 5
NR	XP_007160013.1	0	hypothetical protein PHAVU_002G285500g [Phaseolus vulgaris]
COG	YP_003473451.1	1.00E-14	chromosome segregation protein SMC [Thermocrinis albus DSM 14484]
Swissprot	tr\|Q9LFS8\|SMC5_ARATH	0	Structural maintenance of chromosomes protein 5
trEMBL	tr\|V7CP68\|V7CP68_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW32007.1}

Sequence

Transcript Sequence

>Glyur000379s00015029.1
GGGGAAGATGATTATGTGCCTGGAAACATTCTAGAGATTGAGCTTCGTAATTTCATGACCTTTGATTACTTAAAATGTAAACCTGGGCCTCGGTTGAATCTTGTAATTGGGCCCAATGGTTCTGGAAAGAGTTCTCTTGTATGCGCTATTGCTCTAGGCCTCTGTGGAGAGCCCCAGTTGCTTGGGCGAGCCACGAGTATTGGGGCATATGTGAAGCGGGGAGAAGAGTCTGGCTACATTAAGATTACCTTGAGAGGGGACCATAAAGAGGAGCACATTACCATTATGCGTAAAATAAATACTAACAACAAGTCTGAATGGTTGTTCAATGGAAATGTTGTGACCAAAAAGGATGTGTCTGAAACCATTCAAAGGTTCAACATCCAAGTCAATAATTTGACTCAATTTCTACCGCAAGACAGGGTTTGTGAGTTTGCAAAGTTAACTCCTGTGCAACTTCTGGAAGAGACTGAAAAGGCTGTTGGTGATCCTATGCTTCCGGAGCAACATCGTGCACTAATTGATAAAAGTCGTGCATTGAAGAATATTGAGCTGTCTCTTGAGAAAAATGAAGGAACTNTAAATCAGTTGAAGGAACGTAATACTGAATTAGAGAAGGATGTTGAACGTGTTCGCCAAAGAGATGAACTTCTTGCCAAGGCCGAATCAATGAAAAAGAAAGTGCCATGGTTGAGGTATGATATGAAGCAGGCAGAATATCGGGAAGCTAAGGACCGTGAGAACAATGCAGAAAAGGCATTAGAGGAAGCTGCAAAGTTATTAAATGATCTCAAAGAACCTATTAAGAAACAAAAAGAGGAAAAGGCTGCATTAGATGCAAAATGTAAAAAGGTAAGCAGCCGCTTAGATTCGAATGCCAAGAAGCGATTCGAGCTTAAGGAGAAAGAGAACCAATTGGATGTGGAATTACAAGGAAAGTACAAAGATATGGAAGAGTTGAGGAGGCAGGAAGAAACTCGGCAACAAACACTTATAAAAGCTAGGGAGGAACTTGCTGCTGCTGAACTTGAGCTTGAGAATCTACACCCTTATGTACCTCCCAAGGATGAGCTTCAAAGACTGAGAGATGGTATTGTGGAATTGGATCATTCTGCTAATCAAATGAGGCAGAATAGGTCACAAGCAGAAAATGAAATAAGGCAGAAAATGTCATCCTTGATGCGGTGTAAAGAGAGGTTGAAGGAAATGAATAATAAAAGTACCAAGTGTTTGCATGCATTACAAAAATCTGGGGTNGAAAAAATTTTTGAGGCTTATAAATGGGTCCAAGAGCATCGCCATGAATTCAACAAAGAGGTTTATGGCCCAGTTTTAGTTGAGGTGAATGTCTCAGATCGGCAACATGCTGCATATCTAGAGGGTCAAGTTGCTCGTTACACTTGGAAGTCTTTCATAACACAAGATTCTGGTGATCGGGACCTTTTGGTGAAGAACCTACAGTTCTATGATGTACCAGTTTTAAATTATACTGGTGGTGATGGCCATCGAAGAGAGCCTTTTGAAGTTTCCAAAGATATGCGTACTCTTGGTATCTACTCCCGGTTGGACCAAATTTTTGATGCTCCTGTTGCTGTAAAGGAGGCTTTGATTAGCCAATTCAATCTAGATCATTCATATATTGGATCTAAAGAAACTGATCAGAAGGCTGATGAGGTCCCAAAATTGGGAATTATTGATTTATGGACACCAGAAAATCACTACCATTGGTCTAAGTCTAGATACGGAAATCATATCTCAGCAGTTGTTGAACAAGTGGAACGCCCACAACTTATATTGAATAATTTGAATGTGGGAGAAATTGAGAATCTGAGTTCCCAGGAAAGGGAGCTTCAAGAACTCATTGCTAACTTGGAGGAAAGTGTTAGAAGGTTTCAAGATGAGGAAAGAAGCTTAATGAATCAAGCTGCTAATCTTCGTAAACAACGGGAGGACATTAGTACTACAGCACAGAATGAGCAAAAAAAACGTCAAACAATTATTAGCCGTATTGAACAAAGGAAAAGGATACTAAAATCGATGGAGAAGCAGGATGATTTAGATACTGAGATAGCAAAGCTTGTTGATCAGGCTACAAAATGTAACATTCAACGATTCCGTAACGCAATTAAAATTAAGGATCTACTTGTTGAAGCTGTGGGCTACAGACGGAGTTTTGTTGAACAACGTATGGCTTTCATTGAATTTGATGCAAAGATTGGAGAAATGGAGGCCAATCTGAAGCAGCATGAGAATTTTGCTGTGCAAGCATCATTACACTTTGAAAACTGTAAGAAAGAGGCTGAGAATTGTAGACAGAGGCTTACAGAATTGTTGAACNATGCTAAGTCAATTGCTCGGCTTACACCCGAGCTAGAGAAGGAATTTCTTGAGATGCCTACTACAATTGAGGANTTGGAAGCAGCTATCCAAGATACCATTTCTCAAGCGAATTCAATCCTTTTTGTCAATCATAACATATTGGAACAATATGAGGATCGTCAAAGACAGATAGAAGATCTTGCAGCAAAACTTGAAGCAGACAAGAAAGAATCTAGAAGGTGTCGAGCTGAATTAGATAACATTAAGGGAAAATGGCTTCCAACACTGAGAAACCTTGTGGCTCAGATAAATGAAACTTTTAGCTGCAATTTTCAAGAGATGGCTGTTGCTGGAGAAGTTTCACTAGATGAGCATGATATGGACTTTGATCAATTTGGAATACTTATAAAAGTCAAATTCAGAGAAAATGGGAAGCTTGAAAATCTCAGTGCCCATCATCAATCAGGAGGGGAGCGATCGGTTTCAACTATTGTTTATCTTGTCTCCCTTCAAGATCTTACAAACTGCCCATTTAGAGTTGTTGATGAGATCAACCAAGGGATGGACCCAATAAATGAAAGGAAGATGTTTCAGCAACTAGTGAGAGCAGCAAGCAAGCCAAATACACCACAGTGTTTCTTGCTTACCCCGAAGTTGTTACCGGATCTGCAATATAGTGAGGCATGCAGTATATTGAATGTAATGAACGGCCCTTGGATTGAGCAACCCTCGAAGGTCTGGACCACTGGTGAACGATGGAGTATTATCACGGGACATGTTGGAGAGACCCTATGTTAGTTAAAGTGAAAAACACTATGGAGTTACGCCACAAGGGGATCGATGTAAGCTTTTGGGACCTGTTTAGCATTTTGTATAGTTTTGTGGAGAAAGAGAACTTTGCATTTGAGCGAACAAGCTTTTTGTTCCATTGATTGAATATATCTAATATTGTAAATATCCTTCCTATATATTTATGCTGTTATGATAATTTAACACCGTTATTCCCA

Protein Sequence

>Glyur000379s00015029.1
GEDDYVPGNILEIELRNFMTFDYLKCKPGPRLNLVIGPNGSGKSSLVCAIALGLCGEPQLLGRATSIGAYVKRGEESGYIKITLRGDHKEEHITIMRKINTNNKSEWLFNGNVVTKKDVSETIQRFNIQVNNLTQFLPQDRVCEFAKLTPVQLLEETEKAVGDPMLPEQHRALIDKSRALKNIELSLEKNEGTXNQLKERNTELEKDVERVRQRDELLAKAESMKKKVPWLRYDMKQAEYREAKDRENNAEKALEEAAKLLNDLKEPIKKQKEEKAALDAKCKKVSSRLDSNAKKRFELKEKENQLDVELQGKYKDMEELRRQEETRQQTLIKAREELAAAELELENLHPYVPPKDELQRLRDGIVELDHSANQMRQNRSQAENEIRQKMSSLMRCKERLKEMNNKSTKCLHALQKSGVEKIFEAYKWVQEHRHEFNKEVYGPVLVEVNVSDRQHAAYLEGQVARYTWKSFITQDSGDRDLLVKNLQFYDVPVLNYTGGDGHRREPFEVSKDMRTLGIYSRLDQIFDAPVAVKEALISQFNLDHSYIGSKETDQKADEVPKLGIIDLWTPENHYHWSKSRYGNHISAVVEQVERPQLILNNLNVGEIENLSSQERELQELIANLEESVRRFQDEERSLMNQAANLRKQREDISTTAQNEQKKRQTIISRIEQRKRILKSMEKQDDLDTEIAKLVDQATKCNIQRFRNAIKIKDLLVEAVGYRRSFVEQRMAFIEFDAKIGEMEANLKQHENFAVQASLHFENCKKEAENCRQRLTELLNXAKSIARLTPELEKEFLEMPTTIEXLEAAIQDTISQANSILFVNHNILEQYEDRQRQIEDLAAKLEADKKESRRCRAELDNIKGKWLPTLRNLVAQINETFSCNFQEMAVAGEVSLDEHDMDFDQFGILIKVKFRENGKLENLSAHHQSGGERSVSTIVYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASKPNTPQCFLLTPKLLPDLQYSEACSILNVMNGPWIEQPSKVWTTGERWSIITGHVGETLC

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00379	153852	166519	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0000724 double-strand break repair via homologous recombination

GO:0006281 DNA repair

cellular_component
GO:0030915 Smc5-Smc6 complex

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000379s00015029.1	PF02463.14	SMC_N	10	979	2.80E-24

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.434
SRR1783600	control	3.492
SRR1783602	moderate drought stress	5.404
SRR1811619	moderate drought stress	5.371

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	6.490
DRR006520	Root Summer glycyrrhizin high producing strain	6.855
DRR006521	Root Winter glycyrrhizin high producing strain	8.887
DRR006522	Root Winter glycyrrhizin high producing strain	8.664
DRR006523	Root Summer glycyrrhizin low producing strain	5.888
DRR006524	Root Summer glycyrrhizin low producing strain	5.693
DRR006525	Leaf Summer glycyrrhizin high producing strain	5.063
DRR006526	Leaf Summer glycyrrhizin high producing strain	5.085

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	10.808
SRR2868004	Drought Stress (root)	12.615
SRR2967015	Control (root)	12.506

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	4.677
SRR9715740	Leaf	4.366
SRR9715741	Leaf	5.039
SRR9715739	Root	0.221
SRR9715742	Root	2.229
SRR9715743	Root	2.108

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	23.239
SRR8749028	MeJA induced 9h	21.423
SRR8749029	MeJA induced 9h	13.308
SRR8749030	Uninduced	8.287
SRR8749031	Uninduced	5.522
SRR8749032	Uninduced	4.737

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	12.987
SRR8400027	Control - Root	11.705