Gene detail

Gene detail information of Glyur000379s00015026

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G12470.1	7.00E-107	Protein of unknown function (DUF3411)
NR	XP_004499934.1	0	PREDICTED: uncharacterized protein LOC101505551 [Cicer arietinum]
trEMBL	tr\|A0A072UV54\|A0A072UV54_MEDTR	0	DUF3411 domain protein {ECO:0000313\|EMBL:KEH33261.1}

Sequence

Transcript Sequence

>Glyur000379s00015026.1
CTAGCTTATCAAGTAGCCTATCTAACTCCGACGCTTGACCCTCCATTTTTAACTGTCACCAACTGTACTCTCTCTCTCTTCTTTCTCTCTCTAAAATGGCCATAGCTTCCTTCTCCAACCTCTCTACACACTTGTTCTCTCTTCACTCTCACTCTCACACTCAAAGCAACTTGTATCACTGCAGCCACTCCTCTCTACAAAGCTACACCGTTGTCACAACCCACAATGGAACTTTCACCTTCTTCCCTTCCAAGCTCACTAATTGCTCTGCACCCATTAATTTCCCGCCCACCCATTTGCTCCATTCTCCGGCCGCCTCTTCCGCCGGGAATGGAGGCGGGTTCCCGGGGAGCGGAGGAGGTGGAGGCGGCGGCGGCGATGGAGGCGGTGAAGAGGAGGAAAGGGACCGGAACAGGGAAGAGGCCATGCTGGTGCTGGCGGAGGCCGGTAGGTCGCTGGAGAGTTTTCCGGCGGATTTAGCGGCGGCCATTAGGGCGGGGAGGGTGCCGGGTTCGATTGTGCGGAGGTTCTTCGAGTTGGAGGGGTCGACTGTGTTCCGGTGGTTGCTCAACTTTGGAGGGTTTAAGGAAAGGTTGCTGGCTGATGATTTGTTCTTATCCAAGCTTGTCATGGAATGTGTTGTTGTCATCTTCACCAAGGCTGCTGCAGAGTTGGAGCGCCGAAAAGAAAACTTCACCAAGGAGATGGATTTTGTTGTTGCTAATGTGGTAACAGGCATTGTAACAGGTTTTGTGCTTGTGTGGTTTCCTGCTCCCACTGTATCTCTTAAACCTCCTCTTGCAATTAGTGCTGGACCTATCGCTAAATTCTTCTATGGCTGTCCTGAAAATGCGTTTCAGGTGGCTTTGGCTGGAACAACATATACACTTCTACAGAGAATAGGTGCTATAGTGCTTAATGGAGCAAAGCTATTTGTAGTTGGAACCAGTGCTTCACTGGTTGGTATCAGTATAACAAATGCATTGATCAATGCACAGAAGGTTGTGAATAAAACATTTTCCGTTGAGAACTTACCAGTAATATCAACCAGTGTAGCATATGGAATTTACATGGTGGTAATTAGCAACCTCAGGTACCAAGTACTTGCAGGAATTATTGAGCAAAGGATTCTAGAACCATTGCTACGCCGAAACAAGCTTATACTAACTGCAGCATACTTCACTGTTAGAACTGCCAATACTTACTGGGGGTCACTACTGTGGGTGGATTTTGCTCGATGGGTTGGAGTCCAGAAGATAAAGGATTAACCACTATTTTGCAATTGCAGCACAGGTTATATATAGTCATGATTTCAATTGGTCAAAGCTTGGGTATATTGGTTCATTGATAGACCTCTTTAATGGTTGGTGCTTCAATTTGTTCCCTTGTATTTTAATTTTCATCTTCCATTGTCTAAGCAGAATTGTACATTTGTCAGTGACAGAGTCTCCATCTTGTATAGTCCACAACACATGGAAACACCGTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00379	139559	142843	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000379s00015026.1	PF11891.3	DUF3411	165	340	1.20E-55

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.803
SRR1783600	control	0.789
SRR1783602	moderate drought stress	0.944
SRR1811619	moderate drought stress	0.918

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.639
DRR006520	Root Summer glycyrrhizin high producing strain	1.714
DRR006521	Root Winter glycyrrhizin high producing strain	0.749
DRR006522	Root Winter glycyrrhizin high producing strain	0.684
DRR006523	Root Summer glycyrrhizin low producing strain	2.875
DRR006524	Root Summer glycyrrhizin low producing strain	2.877
DRR006525	Leaf Summer glycyrrhizin high producing strain	50.216
DRR006526	Leaf Summer glycyrrhizin high producing strain	50.155

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.012
SRR2868004	Drought Stress (root)	1.701
SRR2967015	Control (root)	1.540

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	21.601
SRR9715740	Leaf	19.854
SRR9715741	Leaf	14.031
SRR9715739	Root	0.167
SRR9715742	Root	1.098
SRR9715743	Root	0.998

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.558
SRR8749028	MeJA induced 9h	1.991
SRR8749029	MeJA induced 9h	0.666
SRR8749030	Uninduced	4.143
SRR8749031	Uninduced	0.242
SRR8749032	Uninduced	0.513

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.810
SRR8400027	Control - Root	1.084