Gene detail information of Glyur000379s00015025 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G13760.1 | 0 | Plasma-membrane choline transporter family protein |
| NR | XP_004499932.1 | 0 | PREDICTED: protein PNS1-like isoform X1 [Cicer arietinum] |
| trEMBL | tr|I1LKG3|I1LKG3_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA11G16250.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00379 | 132715 | 136217 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000379s00015025.1 | PF04515.7 | Choline_transpo | 232 | 545 | 1.50E-65 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.770 |
| SRR1783600 | control | 4.695 |
| SRR1783602 | moderate drought stress | 8.312 |
| SRR1811619 | moderate drought stress | 8.428 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 8.529 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 8.380 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 25.668 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 24.830 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 6.879 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 6.883 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.498 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.457 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 12.587 |
| SRR2868004 | Drought Stress (root) | 15.820 |
| SRR2967015 | Control (root) | 15.748 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 12.973 |
| SRR9715740 | Leaf | 10.123 |
| SRR9715741 | Leaf | 17.797 |
| SRR9715739 | Root | 7.397 |
| SRR9715742 | Root | 17.565 |
| SRR9715743 | Root | 14.095 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 14.878 |
| SRR8749028 | MeJA induced 9h | 45.823 |
| SRR8749029 | MeJA induced 9h | 27.837 |
| SRR8749030 | Uninduced | 29.538 |
| SRR8749031 | Uninduced | 30.165 |
| SRR8749032 | Uninduced | 25.804 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 13.895 |
| SRR8400027 | Control - Root | 10.751 |