Gene detail

Gene detail information of Glyur000379s00015019.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G52030.2	4.00E-117	F-box family protein with WD40/YVTN repeat doamin
NR	XP_004514570.1	0	PREDICTED: F-box/WD-40 repeat-containing protein At3g52030-like [Cicer arietinum]
Swissprot	tr\|Q9SV01\|FBW4_ARATH	7.00E-151	F-box/WD-40 repeat-containing protein At3g52030
trEMBL	tr\|I1LKG1\|I1LKG1_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA11G16190.1}

Sequence

Transcript Sequence

>Glyur000379s00015019.1
CAAACCGAACCGAGCCGCGAACTCCCGTAGTTTTCGCTTATTACACCAGGTGGATGCTGTTCCCTCACTCTGAACTTAACAATGAGCAAACCGCGACCAAGTTTCACGCCGGCGGCGGAGGATAAGACGGCTCCTACTCCGGCCACCGCCGCCGACCAAAGAAAGAAACGCCGCGAAACTCAGACCACAATACAGTCCCTCGACCGCGACATCCTTTGCACCATCTTTGCTTTCCTTGACATGTTCGACCTAGTTCGCTGCTCCGTCGTTTGCAAATTCTGGAATGCAATCGTTGAGTCGCGGTCGCTGCGAGAGTTTTACGACAGGAAGCTGAAGAATTCTTCTCCTACCTTCACTCCGAGTTCATCTGAATTTACTGAAAAGCCCCTGAGGGTGATTTTAGGGGAATTGGCTATGGAGCAGCATAGATTGGCNCTTCGAGGTGGTGCGTTTCATGTTGATCAATGGAGGGGTCATTCAACCGCGGTTTCTCAGTGCCGAATGAAAANGGGCATGGTTGTTACTGGTGTGGGAGATAAGGTTATTCGTCTCTGGTCATTAGACAGCTACAAATGTATAGAAGAATACTCGATACCCGATATGTTCTCTNTAGTTGACTTTGATTTTGATGAGAGCAAGATTGTTGGTCTAATTGGTAGTCGTTTGTGCATATGGAGGCGGAATGGGAAAAGAAGTGTATTTCCTTCTCTTGAAGGCAAATTTGTAAAAGGTTCATGCATGCGTTACTTTGATCCAGAAGCTGTGGTTGGATGTGATGATGGGGCTGTTCGTGTTTTTGACATGTACAGTAGGAGATGTTCTCAAATAATAAGAATGCATCATGCACCTATAACTTGTTTATGTTTGAGTGAAGATCAACTGATACTAAGTGGCTCCACTTCAGGAAGTATAACAATATCAGATCCNTCCTCTGTTCAGCAAGTAGCAACACTTAGATCGAGTGATGTCAGAGTCAAACCTGGGAATGTAATGGAACTATGGAAGCATATTNTATTATCTCAACCTTTGAGTTTGTTTCTAATTTCACCAGTCCTTGGCATAAGGGCCTTGTGTTTCAATCCCTCCTCTCAGCTAGTGTTTGCCGGATCAGCTGTTGGGTATACATATTGTTGGGANCTTAGGACAAGGAGACTGTTGTGGGACACAAGAGTGAGTCCTAATGTTGTGTACTCTTTACAGCACTTACAGAATGACAAATCAACATTGGCTGTTGGGGGAATAGATGGCATCTTAAGATTTGTAAATCAAAATGATGGCAATGTTGTTTCAAGTTGTATTGTGGAGGATAAATTGTTGTCAACACCATCTCGAAGTCATTCAGGCACCATTCGAAGAAGGAAGGGGAGGAGATTGCCTGATGATACCTACATAAANATTGACCGCATTCCCATGAGTGCTCGACCTGCTATTACATGCCTCGCTGTTGGAATGAAGAAGATTGTCACCACACACAATACCACTGACATCAGATTATGGAAATTTAGAGACAATACCTTTACTTTGTAAAATTAAGAATTCAAGATCTNTCTATGTACTATTTGAGATAATTATCTGGTAACAAAAACAAAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00379	100839	105953	+

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000379s00015019.1	PF12937.2	F-box-like	43	76	2.80E-07
Glyur000379s00015019.1	PF00400.27	WD40	129	159	0.1
Glyur000379s00015019.1	PF00400.27	WD40	245	279	0.0014

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	7.003
SRR1783600	control	7.054
SRR1783602	moderate drought stress	9.434
SRR1811619	moderate drought stress	9.365

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	11.004
DRR006520	Root Summer glycyrrhizin high producing strain	10.455
DRR006521	Root Winter glycyrrhizin high producing strain	9.999
DRR006522	Root Winter glycyrrhizin high producing strain	9.903
DRR006523	Root Summer glycyrrhizin low producing strain	11.077
DRR006524	Root Summer glycyrrhizin low producing strain	10.884
DRR006525	Leaf Summer glycyrrhizin high producing strain	6.377
DRR006526	Leaf Summer glycyrrhizin high producing strain	6.471

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	12.469
SRR2868004	Drought Stress (root)	12.792
SRR2967015	Control (root)	13.262

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	6.762
SRR9715740	Leaf	9.191
SRR9715741	Leaf	9.449
SRR9715739	Root	2.652
SRR9715742	Root	4.893
SRR9715743	Root	4.391

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	10.668
SRR8749028	MeJA induced 9h	11.631
SRR8749029	MeJA induced 9h	7.820
SRR8749030	Uninduced	13.898
SRR8749031	Uninduced	6.723
SRR8749032	Uninduced	5.068

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	14.333
SRR8400027	Control - Root	14.247