Gene detail

Gene detail information of Glyur000379s00015018

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G63470.1	5.00E-163	serine carboxypeptidase-like 40
NR	XP_004514571.1	0	PREDICTED: serine carboxypeptidase-like 40-like [Cicer arietinum]
COG	NP_902682.1	2.00E-32	serine carboxypeptidase [Chromobacterium violaceum ATCC 12472]
Swissprot	tr\|Q0WRX3\|SCP40_ARATH	0	Serine carboxypeptidase-like 40 (Precursor)
trEMBL	tr\|G7IZJ6\|G7IZJ6_MEDTR	0	Serine carboxypeptidase-like protein {ECO:0000313\|EMBL:AES69761.1}

Sequence

Transcript Sequence

>Glyur000379s00015018.1
ATGGGCAAAACAACAAGTTGTTTGTTTCTTGTATCCTTTCTCATTGTCACTCTCTTTGTGGCTGAAATCCATGGAAGCAAACAAGCTAAGGCCCTTGATAATTTGCACAAGTCCAAATTCAGGGCAAATTCTCAAGTTGATAGGAGTGATGACTTTGAGGCACAAGAGATTAATGTGGTTCATTCTTCTGATCATGATCATGATCATCAGGATGGTTTGAAAGAGAAAGACAGGATTGAGAAGCTTCCGGGGCAGCCACATGTGAAGTTCTCTCAATATGGAGGGTATGTCACAGTGGACAAATTGGCAGGGCGTGCCTTTTACTATTACTTTGTGGAAGCTCATCATTCTAAGGAAACACTGCCTCTTCTTCTTTGGCTCAATGGAGGTCCTGGATGTTCATCTCTTGCCTATGGAGCAATGCAAGAACTTGGACCCTTCCGTGTGAATAGTGATGGGAAAACGCTTCACATAAATAGATATTCATGGAACTATGCTGCAAATGTTTTGTTCCTTGAGTCACCAGTTGGGGTAGGATTTTCTTACTCAAACAAATCATCAGATTATGACACCAATGGGGACAGAAAAACAGCTGCAGATAACTATGTGTTCTTAGTGAATTGGTTGGAGAGGTTTCCTGAGTATAAGGACAGAGACTTCTACATTGCTGGAGAGAGCTATGCTGGGCATTATGTCCCTCAACTTGCACACAATATTCTCTACCACAACAAAAAGGCTAACAAGAAAATTGTCAACCTCAAAGGAATAATGATTGGGAATGCAGTGATCAATGACGAAACAGATAATCGAGGAATGTATGATTTTCTTGCAAGCCATGCAATCATACCAGACCAAACAGCACATTACATCAACACATTTTGTAATTTCTCATCAAGTAACAATCAGACTGGTGAGTGCAATGCAGTAGGAAAAGAATTAGCAAGGGATACCATGTTCATTGATATCTACAACATCTATGCTCCAGTGTGTACTAATCACAACCTCACTACCCATCCCAAGAAGAACTCGGTTGTTCTTGATCCCTGTAGTGATGATTATGTATATGCATATCTTAACCGGGTTGATGTTCAAGAGGCCCTCCATGCCAATGTCACCAAGCTCAAATATGACTGGGAGCCCTGCAGTGAAATCATTCCAAGTTGGAGGGATAGCCCTTCAACAATCATTCCCCTTTTACATGAATTCCTCAATAATGGACTCAGGGTGTGGGTTTTTAGTGGTGATATAGATGGAAGGGTGCCTGTTACTTCAACCAAGTATTCCATTAACAAGATGAAGCTTCCCATTAACACTACTTGGTATCCTTGGTTATTAAATGGACAGGTTGGTGGCTTTGCTGAAGTNTACAAGGGAGGTCTAACTTTTGCCACAGTGAGAGAAGCAGGACATCAAGTGCCAAGCTACCAGCCAGCAAGAGCCCTTTCTCTAATCAAGCATTTCTTAGATGGCACTCCTCTTCCTGGCAAATTCTAGTTCTAGGACTAGGACTAAAAGATATCACTAGTGTATTATA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00379	94544	99734	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006508 proteolysis

molecular_function
GO:0004185 serine-type carboxypeptidase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000379s00015018.1	PF00450.17	Peptidase_S10	83	490	3.10E-141

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.802
SRR1783600	control	4.619
SRR1783602	moderate drought stress	2.999
SRR1811619	moderate drought stress	2.878

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	6.117
DRR006520	Root Summer glycyrrhizin high producing strain	5.928
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.666
DRR006524	Root Summer glycyrrhizin low producing strain	0.610
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.060
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.060

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	29.646
SRR2868004	Drought Stress (root)	11.224
SRR2967015	Control (root)	16.954

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.043
SRR9715740	Leaf	0.009
SRR9715741	Leaf	0.000
SRR9715739	Root	1.600
SRR9715742	Root	2.228
SRR9715743	Root	1.510

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.124
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	25.405
SRR8400027	Control - Root	27.910