Gene detail information of Glyur000379s00015016 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G49550.1 | 5.00E-40 | |
| NR | XP_004514572.1 | 3.83E-83 | PREDICTED: biogenesis of lysosome-related organelles complex 1 subunit 2-like isoform X1 [Cicer arietinum] |
| Swissprot | tr|F4K657|BL1S2_ARATH | 3.00E-50 | Biogenesis of lysosome-related organelles complex 1 subunit 2 |
| trEMBL | tr|C6SVX1|C6SVX1_SOYBN | 2.00E-79 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA13G06900.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00379 | 91858 | 92408 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000379s00015016.1 | PF10046.4 | BLOC1_2 | 22 | 119 | 5.60E-31 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 7.433 |
| SRR1783600 | control | 6.894 |
| SRR1783602 | moderate drought stress | 20.344 |
| SRR1811619 | moderate drought stress | 18.700 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 10.478 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 10.704 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 8.740 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 8.951 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 12.082 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 13.098 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 6.201 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 5.326 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 16.452 |
| SRR2868004 | Drought Stress (root) | 17.051 |
| SRR2967015 | Control (root) | 16.447 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 14.009 |
| SRR9715740 | Leaf | 14.325 |
| SRR9715741 | Leaf | 13.978 |
| SRR9715739 | Root | 1.942 |
| SRR9715742 | Root | 4.815 |
| SRR9715743 | Root | 4.764 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 27.085 |
| SRR8749028 | MeJA induced 9h | 32.020 |
| SRR8749029 | MeJA induced 9h | 38.286 |
| SRR8749030 | Uninduced | 54.281 |
| SRR8749031 | Uninduced | 53.723 |
| SRR8749032 | Uninduced | 35.973 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 14.076 |
| SRR8400027 | Control - Root | 15.061 |