Gene detail

Gene detail information of Glyur000379s00015013

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G14470.1	8.00E-105	NB-ARC domain-containing disease resistance protein
NR	XP_004512929.1	0	PREDICTED: putative disease resistance protein At3g14460-like isoform X1 [Cicer arietinum]
COG	YP_007146276.1	9.00E-12	Leucine Rich Repeat (LRR)-containing protein [Cylindrospermum stagnale PCC 7417]
Swissprot	tr\|Q9LRR4\|R13L1_ARATH	1.00E-123	Putative disease resistance RPP13-like protein 1
trEMBL	tr\|V5TH08\|V5TH08_CICAR	0	NBS-LRR protein {ECO:0000313\|EMBL:AHB64356.1}

Sequence

Transcript Sequence

>Glyur000379s00015013.1
CGACAAGCCATTGGGTAGCTATCCTTCAATTTTCATACCTCTGAATTTCCTTCCAAATTTGGTCGATCACAACTTCCTTGTTGCTTAGGAGATGGCTGCAACTTTGGTGGGAGGGGCTTTTCTCTCTGCAACTGTTCAAACCTTAGTNGAGAAACTAGCCTCAACAGAGCTTCGTGATTTCATCAGAAACAGAAAACTAAATCAGTCACTATTGGCAGAGATGGAAACAACAATGCTCACTCTTCAGGCACTGCTGGATGATGCTGAGCAGAAGCAGATCGTCAACACTACAGTCAAAGACTGGGTAGATCGGCTGAAAGACGCAGTCTTTGATGCTGAGGATTTGCTCAATCAAATCAGTTACGATTCTCTGCGATGCAAGTTGGAGAGTAAACATGCTGAAAACTTCACTAATCAGGGTGATAATCACAACACGCCAACAAAGAGTTGCAGAGAACCTCTGTCCCACGAAGACTGTTGGTCTTTACTCTCCAAGCATGCATTTGGAAGTGAAGATTTTGGCAGCAATAAATATCCAAACCTTGAAGAAATTGGTAGGAAGATTGCAAGCAAGTGTGGCGGGTTGCCAATAGCTGCAAAAACACTTGGGGGACTTCTACGCTCAAAGGTAGATGCAAACGAGTGGACTGCAATCTTGAACAGCGACATATGGAACTTACGAAATGATAATATTCTGCCTGCTTTGCGTTTGAGCTATCAATATCTTCCCTCTCATTTGAAAAGATGTTTTGCCTATTGTTCAATTTTTCCAAAGGATTATCCAATTGATAGGAAGCAGTTGGTTTTGTTGTGGATGGCAGAAGGCTTTCTTGAACATTCTCAAGGCAAAAAAGCATTGGAGGAAGTTGGTGAGGACTACTTTGTTGAGTTAATATCGAGATCCTTAATTCAACAATCAAATGATCATTTTAGAGGAGAAAAGTTTGTCATGCATGACCTCGTCAATGATTTAGCCACGGTCGTATCTGGAAAAAGTTGTTGTAGGCTTGAATGTGGTGACATCTCTGACTATGTTCGCCATTTGTCATATAACCAAGNAAAATATGACATTTTCAAGAAATTTGAGATTTTCTTTGATTTCAAAGGCTTGCGAAGTTTCTTACCCATTGGCCATTGGTGGCAACAATGTTACTTATCTAGAAAGGTGGTTGATGATTTGCTACCCACACTCGGAAGGTTGCGTGTGTTATCGTTATCACATTATAAAAACATCACCATGCTACCCGATTCAGTTGGCAGTTTGGTGCAGTTGCGATATCTAGATGTCTCCCACACTGGAATCAAAAGATTGCCCGATACAACATGTAACCTTNACAATTTGCAAACCTTGAATTTATCAAAATGTGGGGGTCTCACTGAATTGCCGGTTCATATCGAAAAGTTANTTGAGTTACGTCACCTTGATATAAGTGGGACAAACATAAAGGAGATGCCGAGGCAAATTGTTGCACTAGAAAACCTTCAAACACTATCTGTTTTTGTAGTAGGCAAGCATGAAGTTGGTTTAAGTAGCTCGGGAAGTTTCCTAACCTATGGGGAAAACTCATGCATCAAGAACCTGCATAATGTCGTTGATGCAGTTGAGGCGTATGATGCCAACTTGAAGAGCAAAGAACACATCAAGGAGTTAAAGCTAGAATGGGGTAAACAAACTGAAGACTCTCGAACTGTGAAAAGATGTGCTTGGTATGTTGCAACGCAAAAGTGGCCTCACACTTGGCAGCTACCTTCTCTCAAGGACCTAGTGATTGATGGTATGAAGATGTTGGAGACAATTGGGGCAGAGTTCTATGGCATGGAAGGAGGAGGTTCCAATTCTCCATTCCAACCATTTCCATCCCTAGAGATTCTGGGATTTGAGAACATGCCAAGTTGGACGGAATGGCTTCCCTTTGAAGGCAGCAAATCTCCTTTTCCTCATCTTAAAACTCTCAGGTTAATGGAGTGTCCTGAACTGAGGGGACATTTGCCCGGCCATATATCTTCCATGGAACGAATTGAAATAAGTGGTTGTGGCCATCTCTTGGAAACACCACCTACTCTGCATTGGCTTTCGTCGATAAACGGAGATTTAGATTCTCAAGGGAAACACCACCTACTCTGCTGTGACACGCTGTTGTCTCTGCCAAAAATGATTATTAGCAGCACTTGTCTTCGAGACTTGTATCTCTCTAAGATTCCGTCTCTCACTGCATTTCCAGCTGATGGCCTACCCACTTCGTTAGAGACACTTGATATTGATGACTGTGAGAATTTAGCATTCCTGCCTCCTGAAACGTGGAGCAGCTACACATCGCTTGTGACTTTGTGTTTATTGAATAGCTGTGATGCACTTACCTCCTTCCCACTGGATGGTTTCCCTGTGCTCCGAAGTCTTTCCATTATTTGCTGTAGGAGTCTGGAATCCATTTCTATGTCGGAAAGTTGTTCCCATCGCCCGTCAACCCTCCAATCACTTCAGGTCATTTCCTGTGAGGCACTCAAATCAGTGCCTCAACGGATGGACACCCTCACCGCTCTTGAATGGTTGACTCTCTGCGATGTTCCAGAACTAGAGTTGTCATTTTGTGAAGGAGCTTGGCTGCCTCCCAAATTACGGTCAATTTGGATTGAGTCCGTGAGAAAAGCAACGCCTGTAAGTGGATGGGGTCTCCAACGCCTCACTGCTCTTTCATCTTTGAATATTGGAGGTGATGATATTGTTAGCACCTTGCTGAAGGAGCGGATGCTGCCCATTTCCCTAGTGTCTCTGACAATCACTGGTCTCTCTGGAATGAAATCCTTACCTGTAAATGGCCTTCGACACCTCTCCTCTCTAGAAGAACTTCACCTTGTATTTTGTTCAGGGCTTGAGTCATTTCCGGAACACTGGTTCCCTTCCTCTCTTAAGCTACTCGAGATTGTCGGATGCCCTCTGTTAGAAGCAAGGTATGAAAGAGAGAGAGGGGAACATTGGCCCAACATTGCTCACATCCCTGTCATTAATATAAACGACCAAGTGACGATAATATGA

Protein Sequence

>Glyur000379s00015013.1
MAATLVGGAFLSATVQTLVEKLASTELRDFIRNRKLNQSLLAEMETTMLTLQALLDDAEQKQIVNTTVKDWVDRLKDAVFDAEDLLNQISYDSLRCKLESKHAENFTNQGDNHNTPTKSCREPLSHEDCWSLLSKHAFGSEDFGSNKYPNLEEIGRKIASKCGGLPIAAKTLGGLLRSKVDANEWTAILNSDIWNLRNDNILPALRLSYQYLPSHLKRCFAYCSIFPKDYPIDRKQLVLLWMAEGFLEHSQGKKALEEVGEDYFVELISRSLIQQSNDHFRGEKFVMHDLVNDLATVVSGKSCCRLECGDISDYVRHLSYNQXKYDIFKKFEIFFDFKGLRSFLPIGHWWQQCYLSRKVVDDLLPTLGRLRVLSLSHYKNITMLPDSVGSLVQLRYLDVSHTGIKRLPDTTCNLXNLQTLNLSKCGGLTELPVHIEKLXELRHLDISGTNIKEMPRQIVALENLQTLSVFVVGKHEVGLSSSGSFLTYGENSCIKNLHNVVDAVEAYDANLKSKEHIKELKLEWGKQTEDSRTVKRCAWYVATQKWPHTWQLPSLKDLVIDGMKMLETIGAEFYGMEGGGSNSPFQPFPSLEILGFENMPSWTEWLPFEGSKSPFPHLKTLRLMECPELRGHLPGHISSMERIEISGCGHLLETPPTLHWLSSINGDLDSQGKHHLLCCDTLLSLPKMIISSTCLRDLYLSKIPSLTAFPADGLPTSLETLDIDDCENLAFLPPETWSSYTSLVTLCLLNSCDALTSFPLDGFPVLRSLSIICCRSLESISMSESCSHRPSTLQSLQVISCEALKSVPQRMDTLTALEWLTLCDVPELELSFCEGAWLPPKLRSIWIESVRKATPVSGWGLQRLTALSSLNIGGDDIVSTLLKERMLPISLVSLTITGLSGMKSLPVNGLRHLSSLEELHLVFCSGLESFPEHWFPSSLKLLEIVGCPLLEARYERERGEHWPNIAHIPVININDQVTII

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00379	80809	84549	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0043531 ADP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000379s00015013.1	PF00931.17	NB-ARC	122	251	6.30E-35
Glyur000379s00015013.1	PF12799.2	LRR_4	416	455	4.60E-07
Glyur000379s00015013.2	PF00931.17	NB-ARC	174	458	3.00E-81
Glyur000379s00015013.2	PF12799.2	LRR_4	623	662	5.50E-07

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.849
SRR1783600	control	1.890
SRR1783602	moderate drought stress	4.734
SRR1811619	moderate drought stress	5.190

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.037
DRR006520	Root Summer glycyrrhizin high producing strain	3.239
DRR006521	Root Winter glycyrrhizin high producing strain	3.761
DRR006522	Root Winter glycyrrhizin high producing strain	3.756
DRR006523	Root Summer glycyrrhizin low producing strain	1.792
DRR006524	Root Summer glycyrrhizin low producing strain	1.885
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.625
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.677

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	3.486
SRR2868004	Drought Stress (root)	3.899
SRR2967015	Control (root)	4.905

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.969
SRR9715740	Leaf	1.162
SRR9715741	Leaf	1.058
SRR9715739	Root	0.729
SRR9715742	Root	2.167
SRR9715743	Root	2.213

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.014
SRR8749028	MeJA induced 9h	1.164
SRR8749029	MeJA induced 9h	0.565
SRR8749030	Uninduced	0.385
SRR8749031	Uninduced	0.189
SRR8749032	Uninduced	0.251

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.154
SRR8400027	Control - Root	3.495