Gene detail information of Glyur000379s00015011.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G42870.2 | 5.00E-14 | phosphatidic acid phosphohydrolase 2 |
| NR | XP_010059950.1 | 9.26E-17 | PREDICTED: phosphatidate phosphatase PAH2-like isoform X2 [Eucalyptus grandis] |
| Swissprot | tr|Q9FMN2|PAH2_ARATH | 3.00E-17 | Phosphatidate phosphatase PAH2 |
| trEMBL | tr|A0A059BK45|A0A059BK45_EUCGR | 3.00E-17 | Uncharacterized protein {ECO:0000313|EMBL:KCW66438.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00379 | 76218 | 76505 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K15728 | LPIN | EC:3.1.3.4 | Glycerolipid metabolism | map00561 |
| Glycerophospholipid metabolism | map00564 |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000379s00015011.1 | PF04571.9 | Lipin_N | 20 | 60 | 3.20E-11 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.770 |
| SRR1783600 | control | 0.494 |
| SRR1783602 | moderate drought stress | 0.965 |
| SRR1811619 | moderate drought stress | 1.303 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.857 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.774 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.632 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.238 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.218 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.198 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.738 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.732 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.021 |
| SRR2868004 | Drought Stress (root) | 0.000 |
| SRR2967015 | Control (root) | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.000 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 0.000 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.037 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.000 |
| SRR8400027 | Control - Root | 0.000 |