Gene detail information of Glyur000379s00015008 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G13800.2 | 7.00E-139 | pheophytinase |
| NR | AES69785.2 | 0 | alpha/beta fold hydrolase [Medicago truncatula] |
| COG | YP_007079495.1 | 3.00E-37 | alpha/beta hydrolase [Pleurocapsa sp. PCC 7327] |
| Swissprot | tr|Q9FFZ1|PPH_ARATH | 9.00E-180 | Pheophytinase, chloroplastic (Precursor) |
| trEMBL | tr|G7IZM0|G7IZM0_MEDTR | 0 | Alpha/beta fold hydrolase {ECO:0000313|EMBL:AES69785.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00379 | 69256 | 73025 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000379s00015008.1 | PF12697.2 | Abhydrolase_6 | 153 | 394 | 2.40E-25 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.164 |
| SRR1783600 | control | 5.076 |
| SRR1783602 | moderate drought stress | 7.228 |
| SRR1811619 | moderate drought stress | 6.917 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 17.820 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 17.374 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 26.656 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 25.695 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 20.377 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 20.120 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 26.068 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 26.378 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 30.307 |
| SRR2868004 | Drought Stress (root) | 44.715 |
| SRR2967015 | Control (root) | 48.289 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 46.473 |
| SRR9715740 | Leaf | 53.372 |
| SRR9715741 | Leaf | 78.072 |
| SRR9715739 | Root | 5.805 |
| SRR9715742 | Root | 14.976 |
| SRR9715743 | Root | 12.745 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 4.189 |
| SRR8749028 | MeJA induced 9h | 11.184 |
| SRR8749029 | MeJA induced 9h | 5.284 |
| SRR8749030 | Uninduced | 9.293 |
| SRR8749031 | Uninduced | 6.762 |
| SRR8749032 | Uninduced | 6.211 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 32.171 |
| SRR8400027 | Control - Root | 31.636 |