Gene detail

Gene detail information of Glyur000379s00015005

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G51950.2	4.00E-105	Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein
NR	XP_003539907.1	0	PREDICTED: zinc finger CCCH domain-containing protein 53-like isoform X1 [Glycine max]
Swissprot	tr\|Q0D3J9\|C3H53_ORYSJ	1.00E-172	Zinc finger CCCH domain-containing protein 53
trEMBL	tr\|I1LNZ6\|I1LNZ6_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA12G01350.1}

Sequence

Transcript Sequence

>Glyur000379s00015005.1
CATTAAAAAAGATTTGAAATTTATTAATAACTGTGTCAGAGGGTTAGAGAGAGGGTAGAGGGGCAAGTGAGTGAACGTGCACTATTTGAAACACAGATCTGGATCCACTCAAACCAATTCCCCTAAACACAAAGACACATAGACACTAGCTATCACTTGTTGCTGTTCCTACCATGAGTCCTTGTTTTTTATGGTTTCAAAAGACATAGAAGGAGTTAAAGGGTGTATAGATAGAGAAAGTGTGCTTGTGTTGTGTGTGTGTTTGTGTTTGTGTTTGTAGTGAGAGAAGAAAATCTGGGGTTGATAGAGAGAGAGAGAGGAAAAAAGGCTTTAGAAAGAGACGAGGTTCTCAACTTCACTCTGCTCAGAACCCCATAAAAACACACATACCACACTGCAGGGAGCACTGAGTGAGGCAATTGATGGTTCTGCTACTGCTGCCACTACCAGGCTATAGAGAAGGCGGTGGTTTGGCTTTTATGTGTAGTAATAAATAAAGGTTATTGTGTGTGTGTGTGTGTGTGGGGTGTAAACAGTCTCAAAAGAGAGTAATAATCAACAGAAGAAAGATTATCCTTTCATGGGAACATGAGAAAGAAACACACACTCATCTGAGGTTGGTAGTTAGGGCTAGCTTGTGTGTGGTTGAGAAAGAAAGAAAGAAACTTTTACTTGTAGTAGTAGGAGTGTGTGTGTGAGAGAGAAGATAAACAAAGTTACACTCAACTCACCAACAGGAGAACACAAACAAAAAATAAAAGTTGAATTTTTAGGGAGTGGCTAGTTTTTTCTTTTCTTTGTGGAATTTTAAGTAAGTAAGAAAGAATATTTGCAAGGCATGGATGGTTATGAAGCTACAAGGATTGTGTTTTCAAGGATCCAAAACATGGACCCTGAAAATGCTTCCAAAATAATGGGTCTACTTCTGCTTCAAGACCATGGTGAAAAGGAAATGATTAGATTAGCATTTGGTCCAGAAGCCCTTGTTCACTCAGTGATTCTCAAGGCTCACAAGGAGTTGGGATTACCCTTGAACATGAACATGAACATGAACTTGAACTCTCCTTCTACACCTCCATCTCCATCCCCTTTCCTTTCCAGCAACCCAGTCCCTATTTCCAGGCAAAATTCCAATGCTTCCAGGCTCATAAACAGTGGCATGAACCTCCCTCCCACTCTCAGCATTCCAAACCAACCTCCTCCTACTTCTGCTACTTCAGGTTCTTGGGCCACTCTATCTGAACTTCAAAACCCTGATGACTTTTCTACTACTTCACCTTCCTTACCCTTCTATGGAAATGGGGTGTCAGATCCAATGGATGAGTTCCAGCTTCAAGACCAGCTCTCTTTCCTCAATGATGGGTCGTCTTCACCTTCCCTTGTTGTGCCAAAGAACTCAGATTTGTTTTACACTCAGTCAGAGTTGTCTTCTAGTCCTACTACTGGTGGTGACCCTTCATTCTTTCCATCATATGGTTGGGGAGGGTCACTTCACAGAAGGAGTTGTTCTGTGAATGATGCTGCATGTTTGGGCGGTTCTGAGGATCCCAATTCTGGTTTGGGTTGGAAGCCTTGCCTTTACTTTGCAAGAGGGTACTGCAAGAATGGAACTAGTTGTAGATTCCTTCATCATGGGGGACTCGGAGGAGATTCTGCTGAGGGTGCTGCTGCAATGGTTGGTTCTCCTAGTAAGATCGAGATGATGGATCAGTGCCATGAACTCCTCAGATCCAAATCTGTTCAACAACAAAGGCTTGCTGCTGCTTCTCAGCTCGTGGCCTCTTCATCTTTTCCATACTCCCCAAAGTGCATGAGTTTCCTGCTGCAGCAGCAGCAGCAGCAGCAACAAAGTGATACACAAAGAGCCGCAGCTGCAGCTTTGATGATGAATGAGGATTTGCACAAATTTGGAAGATCTAGATTGGAAAGAAATGATTTTTCTCTGAACAGTCCTGGAATGATTAACCCAGCTTCTAGGCAGATATACTTGACTTTTCCAGCAGATAGCACTTTCAGAGAGGAAGATGTTTCAAACTACTTCAGCATTTATGGGCCTGTTCAAGATGTGAGGATCCCATACCAGCAAAAGAGGATGTTTGGATTTGTTACCTTCGTTTATCCGGAGACAGTGAAGCTCATCTTAGCTAAAGGAAACCCTCATTTTGTTTGTGATGCTCGAGTGCTTGTTAAGCCTTACAAGGAGAAGGGAAAAGTACCAGACAAGTACAGGCACCCTCCTTTTCCTTGTCTTTTACTATCGATATCAATTAACTGTGACCTGATGTTTATTGACACTTGCAGAAAGCAGCAGCAACAAGTAGATAGGGGAGATTTTTCTCCTTGTGGTACACCTACTGGATTGGATGCTAGAGACCCATTTGATCTCCAAGTTGGGGGGAGAATGTACTACAATACTCAAGACATGCTGTGGAGGAGGAAGCTGGAGGAACAACAAGCTGATTTACAGCAAGCCCTTGAGCTCCAAAGTAGAAGGCTTATGGGTCTGCAACTTCTTGACATCAAAAAGCAACACCAACGTGCACTTTCCACAGGAAGTCCAATTCCTTCCCCCACACACTCTCCTAACATGTGCAACCAGAATCTTGTTCTTTCTTCATTCCACAGCAGCTCCTCAGAGAGCCAAGAGGATAATGGTTCAGGCTCAGGTTCTGCTAGCACTGCATCAATTCCTGTTGATCAGCAGCCATTGCAGCAGGTAGTCAACATTTCTGCTGGCAAAGAAGTAGCAGCCAATGGAGAGAATGGAAATAGTGATGCAAGTGGCAAGAATGAAGATCGTGATTTACAAGAATGCTTGGAGCATAATCTCCCAGATAGCCCTTTCGCTTCCCCTACAAAAGCTATTGGAGACTACATGGCTGCCTTCAACAATGGACCTAANGAGGCCATTGATTCAGATGCCACAGCTGCTTCTGCCAACTCCAAATTTAGTACTACCACATTGCTTCCAGCCACATCTGCTCTTGACATGGGGTCTTTCAAATCCTATAACTGCCAAATACCCAGGTTCTCTTCTAGCCATGGAACCATTGGAATGCTTGCCGGCACCGGAAGAGAAGCACGATCAAAAAATCCTGGACATCAAAAAAATCTTGTAGAGAATCACCACCACTGAGGCCATCACCATCAATCATCAATACTATACTAATTACTCCCATACAAAATGCATACTTAAAAAAAAAGCAGTTCAGTAAAGGAAGTGGGACAGGCATTCCCTTTCTTTTGTTATCATCATTGTACCATTTTCACTTATCATTTTCTGTAGTAAGCTGAACCACAGGTAAAAGAGAGAGAAGAGAAAAAAATAGCACAGAATCAAGAGTCAATGTGTAGTAGTAAAAGTAACAACCTATCACTGTAATATCTTCCCTTTCCTTTCGCTTCCTTTGCNCATGTTAATGTATTAGTTTGTTAGTTATAATAGTAGAGAGGGATAATTTTAAAGTCTTTGTACAGCTGAAGCTCATATCATCATATAGAGAAAGCATTCAGAGGAACAAGTGGTGAAAGAAGAGTTGTTGTATTAACTACAAGGCTGATTCAAATCTGATTTAAGTAACTTTAGCTTGAAGACCAGTAGAGTGAGGAGGAGGGGGGGGAAGGGCATAATTATTAGTCCTACTGTCCTTGTAGTTGGGTTAAAGTTCAAAAAAGGAGAGATTTCTAGCACTATTTTATGTTGGCAGTAATGTCTGTACTCCTCTACTACTTAGTTGTTATTATACACAGTTATTATATCAACCTCTAGGGTCATCAGACAAAAGAGAAAGGTTTAAAAAAAGAAAAAGCAGAAAGCAAAAGTGAGTTTTTATTTTTTAGGACTAAAAATATTGACATCTTTGCCTGTATCCCCTCTTTTGTTTTTCTTTTTTTTTTTTGTTCCCTCTCTTCTCCTGTGCTTTTTTTTTTTTTATAGTATTTGAAAGGAGAATTTGTCTTTGTTCAATTGTTCCTGCAATTATTTATTTGTAAATTGGTGGGGTGTGTCTTTATTTGTTGCCATTATT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00379	45035	50327	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0000166 nucleotide binding

GO:0003676 nucleic acid binding

GO:0046872 metal ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000379s00015005.1	PF14259.1	RRM_6	390	443	7.00E-07
Glyur000379s00015005.2	PF14259.1	RRM_6	390	443	6.10E-07
Glyur000379s00015005.3	PF14259.1	RRM_6	390	443	7.00E-07

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	66.573
SRR1783600	control	66.857
SRR1783602	moderate drought stress	97.972
SRR1811619	moderate drought stress	97.854

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	63.541
DRR006520	Root Summer glycyrrhizin high producing strain	63.209
DRR006521	Root Winter glycyrrhizin high producing strain	7.403
DRR006522	Root Winter glycyrrhizin high producing strain	7.244
DRR006523	Root Summer glycyrrhizin low producing strain	58.359
DRR006524	Root Summer glycyrrhizin low producing strain	59.029
DRR006525	Leaf Summer glycyrrhizin high producing strain	16.030
DRR006526	Leaf Summer glycyrrhizin high producing strain	16.160

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	49.361
SRR2868004	Drought Stress (root)	42.364
SRR2967015	Control (root)	54.424

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	31.841
SRR9715740	Leaf	25.291
SRR9715741	Leaf	31.413
SRR9715739	Root	8.312
SRR9715742	Root	58.232
SRR9715743	Root	46.104

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	22.592
SRR8749028	MeJA induced 9h	22.939
SRR8749029	MeJA induced 9h	9.617
SRR8749030	Uninduced	4.895
SRR8749031	Uninduced	0.908
SRR8749032	Uninduced	2.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	64.479
SRR8400027	Control - Root	61.467