Gene detail

Gene detail information of Glyur000379s00015001

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G13460.1	9.00E-70	IQ-domain 11
NR	KHN13712.1	0	Protein IQ-DOMAIN 14 [Glycine soja]
Swissprot	tr\|Q8LPG9\|IQD14_ARATH	1.00E-32	Protein IQ-DOMAIN 14
trEMBL	tr\|I1LL80\|I1LL80_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA11G20880.1}

Sequence

Transcript Sequence

>Glyur000379s00015001.1
GAAAATTACTCTGAAAGCAAAGTTCTGATAACGTGCATGTTTTTTGGTCTTTGCAATGACTACTTGTGCCTATAAGAAGCTAATTCTATGACAAGTTCTGCAAATTGTTCCTTCTTTTTAGGACAAGTCTAATGTTTAGGTTTTGCACAATTCCATTACTTAAATCAGTCAAATGCCTATTTTGCAATCCAATTGTAAGTTGCACCCATCCACTTGTTCAAACTGAGGATATGGACATGCCTGTTTGAATAAGAGAAAGATATATTGATTCTTTTGAGCAATTTTTATTTTTCTGATCAAAGAAAACTGAAGTTGGTCAATGCGATAGATATTGCTAAATGGCCAAGAAGGGCTGGTTTAGCACGGTAATGAAGCTCTTCACATGGGACACACATTCCACCCAAGAGAAGAGTGAGAAAAGAAGGAAGTGGGTATTTGGGAGGCTAAAGAGAAAGACCAAGAGATTTCATTCAATTGAAGCACCACAACCATCAAAAGAAACAAGANTAAGTGAAGCTGAGCTAAGTGAAGCCGAGGAGGAAGAACACCACAAGCATGCTTTGACAGTGGCCATTGCCTCAGCTGCTGCTGCTGAAGCTGCTATCACTGCTGCTCAGGTTGCTGTTGAGGTTGTTAGGCTTCAATCTGCTCATCAAAATAAAGGGAAACCAGAAGAGTTTCAACCAGTTAAAACTAGGCATGGTGCTTCTCAATCCACCACACACCAATGCCAGAGGAAGATTGAAGACTCTTCAGCCATCAAAATTCAAACAGCATTTAGAGGTTACCTTGCAAAGAAAGCTTTGAAGGCATTGAAGGGAATAGTGAAGCTTCAAGCTATCATTCGTGGCAGAGCTGTGAGACGCCAAGCTATGAGTACTCTGAAGTGCTTGCAATCCATTGTAAGTATCCATTCACAGGTCTGTGCAAGGAGGCTCCAAATGGTTGAAGGGAAGTGGGATTGTGGTGAAAATGAAGAGATGCAGCAAGGTTCAAGAGACAAGATCATAAGGATGGACTCAAACAGTGAGAAAAGATGGGATGACAGCATTCTATTGAAGAAAGAGGTAGATTCCTCTTGCATGATCAAGAAAGAAGCTGTTCTTAGGAGAGAGAGAATAAAAGAGTACTCATATAACCATAGAAAATCAGCTGAATCAGAAAGAAACAAAATAAATGGAAGATGGAAGTACTGGATGGAGCAGTGGGTAGACACTCAACTTTCTAAGAGTAAAGAACTCAAAGACTTAGACTCAGTTTTCAGCTCAAATTCTATAGCAGGGGAGGATTGTGGAAGAAAGCAGCTAAAGCTTAGACATATTCAGAGACAAAATGAAGGTGAAGGATTAGACTCTACAATGCTTTGTTCAAGGAACACTTTAAGAGAAGATCACTCATTTCCAAGCTCTCCAGCATTAATTCCAACATACATGGCTGCAACAAAATCAGCACAAGCAAAAGTAAGATCGACAAGCACCCCAAAAGCAAGGGTAGGAGGGAATTTGGACATGAACTCTGATTGCTATTCACCATGCAAGAGAAAGCTGTCTATTGTGGCTTCCATTAACAGTGAAATTCTCAGTAATGGTAGGATGGGAAAGGTCAGTAATAACCAGCAAAGATCTCCTGGCTTAAAGGGCATCCCAAGGCCTTAAAAAAATGTCAGCATTAATTCAGACTGATCAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00379	21066	23555	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000379s00015001.1	PF00612.22	IQ	139	157	2.80E-05
Glyur000379s00015001.1	PF13178.1	DUF4005	348	430	3.50E-12

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.232
SRR1783600	control	1.251
SRR1783602	moderate drought stress	2.262
SRR1811619	moderate drought stress	2.348

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.707
DRR006520	Root Summer glycyrrhizin high producing strain	0.700
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.127
DRR006524	Root Summer glycyrrhizin low producing strain	0.131
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.124
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.080

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	5.776
SRR2868004	Drought Stress (root)	6.105
SRR2967015	Control (root)	5.347

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.532
SRR9715740	Leaf	1.531
SRR9715741	Leaf	1.594
SRR9715739	Root	0.117
SRR9715742	Root	0.545
SRR9715743	Root	0.800

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	7.653
SRR8749028	MeJA induced 9h	6.236
SRR8749029	MeJA induced 9h	2.237
SRR8749030	Uninduced	0.961
SRR8749031	Uninduced	0.091
SRR8749032	Uninduced	0.201

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.047
SRR8400027	Control - Root	2.558