Gene detail

Gene detail information of Glyur000378s00022520

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G17900.1	8.00E-78	PLATZ transcription factor family protein
NR	XP_004509731.1	1.31E-134	PREDICTED: uncharacterized protein LOC101508712 [Cicer arietinum]
trEMBL	tr\|G7KDS6\|G7KDS6_MEDTR	1.00E-133	PLATZ transcription factor family protein {ECO:0000313\|EMBL:AES95843.1}

Sequence

Transcript Sequence

>Glyur000378s00022520.1
GGAAAAACTGGAATTGATAAGGCCAAAGAGAATACACGAACGAAAATGAAAGGAAATAAAAAGGAAAGAAGGAGGTGGATTCCTTACACACAACGTATCTGCTAGGTTCGGGTTTCGGTTCGGAGCTAGGTTTGGCCGTGTAGACTTTATGCGGATAAGAACGACCCCTCTTCTCTCATCACTTCTCTCTCTCTCTATGAAACACAAGTCNACCGCCTCCAAAGTCCTATACAAGAACCCATTCCCTCCTTCACCGCCCCAAAAACTCCTCTCTAATAAACTCACTCTTTTCTTAAACACAAAAAACACGCTTACCCCTTTTTCTCTATTCATTCGTCTCTCAGAAAACAAATACACACTCACCCCAACTTTCTTAAAGACACAAACTTTGAGTGTATCAGTATCTTCAAGCTGGCGTTCGAGAACCAAGACACCACTGTCCGAGAAATTAAGCCNAAGAACAGGAGAATCATGGGTGGTGGGGGTCCTGAAGATGAGGATAATAATAGGTGGCCACCATGGTTGAAGCCTCTGCTCAAAGAGCACTTCTTTGTTCAATGCAAGCTGCACGCTGATTCACACAAGAGCGAGTGCAATATGTATTGCTTGGANTGTATGAATGGTGCTCTCTGCTCTCTCTGCCTCTCTTACCACAAAGACCACCGTGCTATCCAGATAAGGAGGTCTTCATACCATGATGTGATTAGGGTCAATGAGATTCAGAAGGTGTTGGACATCACAGGGGTNCAAACCTACATTATCAACAGTGCAAGGGTCGTGTTCCTGAATGAGAGGCCTCAACCAAGGCCTGGGAAAGGTGTCACCAACACTTGTGAAGTCTGCGAGCGTAGCCTTCTCGATTCCTTTCGATTCTGTTCTCTGGGTTGCAAGATTGTTGGAACTTCAAGGAATTTCCAGAAGAAGAAGTCACCGGCAATGGTGTCAGACTCGGAGGATTCATATAGCAGCAGCAGTATCGTCCATGGCAGGGTGAAGAACAACAAGGTTCAGAGCTTCACTCCTTCAACACCGCCACCAACTTCGGTTAATTACAGAACGGGCAAGAGAAGAAAGGGAATTCCACACCGTGCCCCAATGGGAGGACTAGTCTTGCAATACTAGACACTTAGTAATTTTAAGTTATTGCTATAATGCCCCTTCTTAGACATCCACACANAAAAAAAATCAGGTTTCTCCATGCAGCTTCAGCATTTCCAATACTCGAGCTTTTTGCTGAAAAGGGCCGGTGCTGGAAGTGTTGTTCTATTTTCTGTTCCCTAGTGGTTAATAGCGTTTGTGTATATAGGAAAAATCCAATAGAAGTGGAAAAGGGTTGGGAAAGTGGAAAATATGACATATGTGAAATATAGTTTGAGATAAAAAAGGANGGTGTTGCAAAAAATAAGCAAGTTCCTTTGGACCAAAGGTAAAGGTGATGGGGACAACAGTGTAGGTTGGGTTTCTAGAGTAATTATATATAAGTTTTGGGGGTTGGGGGTGTAAATAGTGGCTTAGGGAAAAAGGTGGGAAAGATGACA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00378	95682	98149	-

Gene family

Gene family	subfamily
Transcription Factors Family	PLATZ

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000378s00022520.1	PF04640.9	PLATZ	70	141	5.30E-41

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	56.395
SRR1783600	control	56.484
SRR1783602	moderate drought stress	160.757
SRR1811619	moderate drought stress	160.048

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	112.828
DRR006520	Root Summer glycyrrhizin high producing strain	112.040
DRR006521	Root Winter glycyrrhizin high producing strain	381.652
DRR006522	Root Winter glycyrrhizin high producing strain	371.774
DRR006523	Root Summer glycyrrhizin low producing strain	149.692
DRR006524	Root Summer glycyrrhizin low producing strain	149.469
DRR006525	Leaf Summer glycyrrhizin high producing strain	59.556
DRR006526	Leaf Summer glycyrrhizin high producing strain	58.715

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	157.052
SRR2868004	Drought Stress (root)	280.068
SRR2967015	Control (root)	321.888

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	147.983
SRR9715740	Leaf	121.343
SRR9715741	Leaf	209.181
SRR9715739	Root	30.206
SRR9715742	Root	111.244
SRR9715743	Root	95.861

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	88.551
SRR8749028	MeJA induced 9h	207.713
SRR8749029	MeJA induced 9h	140.713
SRR8749030	Uninduced	91.191
SRR8749031	Uninduced	340.164
SRR8749032	Uninduced	232.942

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	134.025
SRR8400027	Control - Root	90.528