Gene detail information of Glyur000378s00022519 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G46700.1 | 1.00E-89 | Tetraspanin family protein |
| NR | AET03269.2 | 5.07E-168 | tetraspanin family protein [Medicago truncatula] |
| Swissprot | tr|Q9FIQ5|TRN2_ARATH | 3.00E-127 | Protein TORNADO 2 |
| trEMBL | tr|G7LH20|G7LH20_MEDTR | 2.00E-168 | Tetraspanin family protein {ECO:0000313|EMBL:AET03269.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00378 | 80017 | 82089 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000378s00022519.1 | PF00335.15 | Tetraspannin | 5 | 254 | 6.10E-29 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.851 |
| SRR1783600 | control | 0.816 |
| SRR1783602 | moderate drought stress | 0.690 |
| SRR1811619 | moderate drought stress | 0.545 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.412 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.487 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.136 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.036 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.953 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.916 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.779 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.830 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 5.393 |
| SRR2868004 | Drought Stress (root) | 5.298 |
| SRR2967015 | Control (root) | 4.232 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.336 |
| SRR9715740 | Leaf | 0.151 |
| SRR9715741 | Leaf | 0.116 |
| SRR9715739 | Root | 0.153 |
| SRR9715742 | Root | 1.623 |
| SRR9715743 | Root | 0.633 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 1.907 |
| SRR8400027 | Control - Root | 1.401 |