Gene detail

Gene detail information of Glyur000378s00022515.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G17910.1	2.00E-11	transferases, transferring acyl groups
NR	XP_004509734.1	1.18E-25	PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein At4g17910-like [Cicer arietinum]
Swissprot	tr\|B3H6K1\|Y4791_ARATH	5.00E-13	Uncharacterized protein At4g17910 (Precursor)
trEMBL	tr\|G7LH17\|G7LH17_MEDTR	5.00E-26	GPI-anchored wall transfer protein {ECO:0000313\|EMBL:AET03266.1}

Sequence

Transcript Sequence

>Glyur000378s00022515.1
GCCGTGCGAGTAAGAATCGGGTCATTTGGAGATCCGAAAACCCAATACGAACCCAATCTTCGTCAAATCAGTACCCGATCCATTGCCATTGCTGGGAAGAGAAGAGTAGCCATTGTGTAATGTAACTAAACTTCATTGTTCTCTGCTTCCGTGCTCAAAGGTGACAGTTGCACCTCAGCCATGGATCCTTCTCTGTCTAAACCCTCCTTCAACCCCAACAAGCATCTCAAAGAAGAATTCGTGAGCAATTTGAGTGGATCCTCTATGCTCGAAATCGCGGCGCTCACAGTAACTATACCTATTCTGGTCCTTATTCGTCACTCCTTCACTTCCATTTCCATGACTGGTGCNTCTGTGAAGAAGAAAAACGACGACGCGCCATCTGGGCATAGAAATTTCAAANCTTACCTAGCTACATTGTCTCTGGATTTTCTTGTCATAGTTGTTCCTATGCTCTTATTTTTCACTGTACTTGCTGACTGGACCTATATCATTGCAAGTTTGTTCACAATCTTAACATTACTTTATATTGCAGCCAAGGNGCTTGGTGGTTCATCTCCTGTTTTAGGAGAGCCCAATTCTCTTAGGGCATATATTACTTCATACAGGGTTATTGTGATGATTATAACAGTCTTGTGCATATTGGCTGTTGACTTCAGAATATTTCCTAGAAGATATGCAAAGACTGAAACTTATGGAACTAGTTTGATGGATCTTGGAGTTGGAGCATTTGTTTTAGCAAATTCATTAGTTTCTCAGCAAGCACGGAATATCACATCTNTAAACTGGAAGACTGCAATGGTTTCAGTTAGTCCACTGATAATCTTGGGGTTTTTTCGTCTTGTTACAACGATTGGTGTGGATTATCAGGTGGGGTTATATTCATTGGGATTCTTTGAAACTTCTGTGGTAACAAGCATTTTGACATGCATTTGCAAATTTCTGCATCTTATTTAACTTTAACAAGGACAATCATCTATATGTTTCTGAAATTCGAAAACTATAGGACCTAGTTTTGGGAAGACTGCATAATAATCTAACCCTCATGATTTGTACAAGCCTAGCAACTCTGGTGCCATGCGTGATAGGGTGAGTGAGGCTTATTTTGCAAAAACGATTCACTTAGCATCTGAATGAAATTTGATCTTGATTGTACTGTGCAGGATTATTTCATTTCAATATCACTTTTAAGCCTAGGTATTGATGGAAAGCCAGAGTAATCTTTAATGTAGTTGTTTCTGGGAATCTGCTCCTGGTAACCACCAGTGTTATCAAATAGCGCTCATAGCGGNGCTATAGCGCTATAGCATAGCGGATTTTGATGAAACCNCTATAGTAACCANGGTGCTATTTCAGTTCCACTATGTGAAATAGCTGAAAGCCAAAAATCCGCTATGTGACAGTGGCTGACTGGGAACTCAATGACGTACGGAGAACTACAGAATAATGAGCCAATGCTGGTAGCTGAAGCCCTAAACTGGAACGTAAAATGAAAGAAGATTGACTAAGAGAGCTACAACTTTAGAGAAGAAAAAACCGGAATTTGTGTTTGGCTGACAAGAAGAATAAAGTTTCAAATTTTTTGCGGAGTTTCATTCTTTGGGGAACTTAGTAGCGGAATAGTGATAGGACAAGTCACAAAGGATAGACCTCTTTGATACCATGTTGANGTTATAGGGTTTCAAATAAAGAGGGAAGAGAAAGAATAAAAACTTTGAATTATGATTATTGTTTGCAATGGTTGATGATTATGATTTGGTACAAAAGCCTAAGCCTAAGCATAAATTTAAATTTAAATTTAAAATTGTTGACATTTATTTATTTTTAAAATTATGCTGATCATTAATTTTCAATTCGACTTGTAAATATTAGGCTATANTTAGTTTGTAAATAAACCCCAATTTTCATCCCCAACCTTAGCAAGATATTTCATGTTAGTCTCTATACTAAAGAAACACGAATAAATGTCTCTGACCTATGCTTCTATCAGTCATATTAGTCCTCAACCTATGCTTTTGTCGGTCACAATAGTTCTCCACTCTAACATAACTGATGGAAAGTAGGTCAATGACCTTTATTTGTGTTTCTTTAGTATAAGGACTAATATGTAAAATCTTGTTCAAGTTGGAGATGAAAATGAAGGTTTNCCCATTAGCTTGTTAACATTTTGAATTTGGTCTGTAGACACTAGAGGATAATTAGATTGAATTTGACTTCAATATACTGATATTAGGGAATAACTAAGAATAGAAAACTAGGGCAGATGCTCATATGAATTTGAATTTGAAAAAATAAAAAGAATAAAAAGAGAGGCCACGTGGAGGTTTTTCTAGAAAGCCATGCGGTTACTTGTGGTTGAGTTCAGTGAGTGTCTCACGTTCAAGATTGAGGATTCTCATTTAATATATAGGGGTGATTGTGAGTTTTGATTGTCTAAAGGAAGCCTTTATCCTTTGTTTTTACTTACATGGTCACTGGCACATTTTTGCTTATTTACAAACTGAGTTATAATTGTCTAATTCATGATGTTCTCAAGGAAGCCAGCAATCATTTTTCCTTTATGTAGGTACATGTTAGTGAATATGGTGTGCATTGGAATTTCTTCTTCACACTTGCTNCTGTATCAATCCTTACTTCCTGTATTAATATTCCCCCACAATATTGCGGAGTTTTTGGTTCATTTGTCCTAGTAGGTACATTTTTTATTTCTGTCTTATCCTTATGTCATGATGTTTGAAATCTGATTTTCTTATAAAATTCAATTTCTGTTTCCAAGGGTATCAGTTTAGTTTGATGCATGGTTTAAATCATTACTTGCTTTCTAATGAAAGAGGAACGGATATCATAAGTCAAAACAAGGAGGGGCTTTTTAGCATATTTGGATATTGGGGGATGTACCTTATTGGTGTTCATTTAGGAAACTATCTTATCTTTGGAAACCATTCCTCTTCATTTAGAAGTAGCAGATGGGTTCGGATGAGAGTTTGGGTTCTAGCAATCCTGTTTTGTGCAACCTGCCATATGTCACTATGGTGTTGGCTGACAATCTACAGGCAAATATCCTCACTGGCTTGGTAAACTTGTCTGTTGATACCCTCTCTGCGTCATCAACCACAGCCCTTTTTATCTTGCTTGTCTATGCGTATATTTTATCAACTGTGATTGGAATTGCAGATTATTTTGGCATGAAGTTAAAATTTTGGTGAAGCTGCCATTTGATATGCTCTAGTCTGTTGTGTTATATATTGTCATTATTTATATTTATTATAAAGATTATATTTCCTTTTACTAATCATCAATTGAAGTTAAAACTCCTGTGGCAATTATGGTTGGTAGTAAAAGGATAAAGCTCATCTTAGCGACACTTAGTATTAAGGACCACGATTTCGTTGACCCGAAGGACAGCCATTTCCCTAC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00378	60018	66240	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K05283	PIGW	EC:2.3.-.-	Glycosylphosphatidylinositol(GPI)-anchor biosynthesis	map00563

Gene Ontology

biological_process
GO:0006506 GPI anchor biosynthetic process

cellular_component

GO:0005789 endoplasmic reticulum membrane

GO:0016021 integral component of membrane

molecular_function
GO:0016746 transferase activity, transferring acyl groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--	--

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.354
SRR1783600	control	3.452
SRR1783602	moderate drought stress	4.069
SRR1811619	moderate drought stress	4.122

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.472
DRR006520	Root Summer glycyrrhizin high producing strain	4.539
DRR006521	Root Winter glycyrrhizin high producing strain	6.935
DRR006522	Root Winter glycyrrhizin high producing strain	6.834
DRR006523	Root Summer glycyrrhizin low producing strain	3.523
DRR006524	Root Summer glycyrrhizin low producing strain	3.323
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.624
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.462

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	5.836
SRR2868004	Drought Stress (root)	5.981
SRR2967015	Control (root)	5.775

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.221
SRR9715740	Leaf	1.903
SRR9715741	Leaf	2.326
SRR9715739	Root	2.502
SRR9715742	Root	3.230
SRR9715743	Root	2.943

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.854
SRR8749028	MeJA induced 9h	5.141
SRR8749029	MeJA induced 9h	3.076
SRR8749030	Uninduced	2.382
SRR8749031	Uninduced	1.030
SRR8749032	Uninduced	1.236

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	7.379
SRR8400027	Control - Root	8.062