Gene detail information of Glyur000378s00022508 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G17790.1 | 1.00E-91 | SNARE associated Golgi protein family |
| NR | XP_007158286.1 | 1.83E-131 | hypothetical protein PHAVU_002G139800g [Phaseolus vulgaris] |
| COG | YP_008162897.1 | 3.00E-12 | pyridine nucleotide-disulfide oxidoreductase [Psychrobacter sp. G] |
| Swissprot | tr|Q8L586|Y4958_ARATH | 3.00E-92 | Uncharacterized membrane protein At4g09580 |
| trEMBL | tr|V7CLZ3|V7CLZ3_PHAVU | 7.00E-132 | Uncharacterized protein {ECO:0000313|EMBL:ESW30280.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00378 | 44997 | 47440 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000378s00022508.1 | PF09335.6 | SNARE_assoc | 98 | 214 | 7.30E-15 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.074 |
| SRR1783600 | control | 0.998 |
| SRR1783602 | moderate drought stress | 1.963 |
| SRR1811619 | moderate drought stress | 1.847 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.046 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.409 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.262 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.256 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.590 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.494 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 4.864 |
| SRR2868004 | Drought Stress (root) | 5.775 |
| SRR2967015 | Control (root) | 7.883 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 5.350 |
| SRR9715740 | Leaf | 0.572 |
| SRR9715741 | Leaf | 3.706 |
| SRR9715739 | Root | 0.042 |
| SRR9715742 | Root | 2.958 |
| SRR9715743 | Root | 2.673 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 5.965 |
| SRR8400027 | Control - Root | 2.011 |