Gene detail

Gene detail information of Glyur000377s00019616

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G32700.2	0	helicases;ATP-dependent helicases;nucleic acid binding;ATP binding;DNA-directed DNA polymerases;DNA binding
NR	XP_004498542.1	0	PREDICTED: DNA polymerase theta-like [Cicer arietinum]
COG	YP_007376881.1	2.00E-56	DNA polymerase I [Nonlabens dokdonensis DSW-6]
Swissprot	tr\|Q588V7\|TEB_ARATH	0	Helicase and polymerase-containing protein TEBICHI
trEMBL	tr\|G7I4E3\|G7I4E3_MEDTR	0	ATP-binding protein {ECO:0000313\|EMBL:AES58811.2} (Fragment)

Sequence

Transcript Sequence

>Glyur000377s00019616.1
CTTATAAATCTGTTTGTTCCAAATTGTATCAAGGCAGCACTATACCAGACAGANTTCCGGCCAGTTCCTTTAGAAGAATATATTAAAGTTGGTAATTCCATTTATAACAAGAGTATGGAACTTTCTAGAACAATCCCAAAAAGAGCTGACCTTGGTGGCAAAGATCCAGATCATGTTGTTGAACTATGTAATGAGGTTGTTCAAGAGGGACAATCGGTGTTAATATTTTGCTCTAGCCGAAAGGGTTGTGAATCAACTGCAAGACATGTTGCAAAGTTCCTTAATAGGTTTACTGTTGATATTAATGAGAATGATTGTGAGTTTGCTGATATTACTTCTGCTATTAACTCCTTGAGAAAGTGCCCTGCTGGGTTGGACCCAGTATTAGAAGAAACTCTTCCAGCTGGTGTTGCATTTCACCATGCTGGCCTTACGGTTGAGGAACGAGAGATTGTTGAAACGTGTTACCGAAAAGGCCTTTTACGTGTCTTAACTGCCACATCGACCTTAGCAGCTGGAGTTAATCTGCCAGCTAGGCGGGTAATTTTCCGCCAACCTAGAATTGGTTGTGATTTTATCGATGGGACGAGGTACAAGCAGATGGCTGGTCGTGCAGGTCGAACTGGAATTGATACAAAAGGAGAAAGTGTACTCATCTGCAAACCAGAAGAGGTGAAAAAAGTTATGGGACTTTTGAATGAAAGCTGTCCACCGTTAAATTCCTGTTTATCTGAAGATATGAATGGAATGACTCATGCAATCTTAGAAGTGGTGGCTGGAGGAATAGTTCAAACTGCTAGTGATATTCACCGGTATGTTAGATGTACTCTTTTGAACTCCACAAAACCATTTCTAGATGTGGTGAAATCTGCTCAAGAATCCCTACGATGGTTGTGCCAAAGAAAGTTTCTTGAATGGAATGAAGACACTAAACTCTACAGTACCACACCTCTTGGACGTGCATCTTTTGGAAGTTCTCTCTGTCCAGAAGAATCACTTATTGTGTTAGCCGATCTTTCAAGGGCAAGGGAAGGATTTGTCCTTGCATCTGACTTGCATTTGGTTTACTTGGTGACACCAATCAATGTTGATGTTGAGCCAGATTGGGAATTGTACTATGAGCGTTTTGTGAAATTGTCTCCTATTGATCAGTCAGTTGGCAATCGAGTAGGTGTGACAGAACCATTCTTGATGCGTATGGCACATGGGGCACCAATACNTTCTTCGAACAAGTCAAGAGATAATACAAGATGGTTGCACAATAAACGGCGAAATCAACTTGGGATCTCCAATGGAGTAGTTAGCTCAGATGATCAAACACTTCGTGTCTGCAGAAGATTCTATGTTGCTCTCATTTTGTCACTTCTAGTTCAGGAAACCCCTGTGGGTGAGGTTTGTGATGCATTTAAAGTTGCTAGAGGAATNGTTCAAGCCTTGCAAGAGAATGCTGGTAGGTTTGCATCTATGGTTGCTGTGTTCTGTGAGAGGCTTGGGTGGCAAGATCTTGAAGGCTTAGTTGCTAAGTTTCAAAATCGTGTATCATTTGGAGTTAGAGCAGAAGTTGTTGAGCTTACCACCATTCCCTATGTTAAAGGCTCTCGAGCCAGAGCACTCTATAAAGCAGGTTTACGTACACCTCTTGCAATTGCTGAAGCATCCATTGCTGAAATAGTAAAAGCACTTTTTGAATCTTCATCATGGGCCACAGAAGGTTCTGCACAAAGGAGCTTACAATTTGGTGTAGCAAAGAAGATAAAGAATGGTGCTCGCAAGATTGTTCTNGATAAAGCTGAAGAGGCAAGGATTGCTGCTTTCTCAGCCTTTAAGTCACTCGGATACACTGTCCCACAGTTAGCTCCACCCATATTATCCACTGCTGCACGCGATTCTATCAGGCAAGANGCAGGAAGTACCTCTGGAAGTGACACAGCTGACACTAGTCATAGCTTTGTTGATGCAAACCACACTGATAATTCTAATATAGTTGCTCTAGAAAAAGAAAGAGAAGACTTGATTAAATCTTCTGACAATGGTGCTCTGGCTTCTGTAGAAGGAAAATCAGGCAATGAGATGCCATGTAGCTTGTCTACTATTCCNGTTGCAGGACCTACAACGAATGAGCTCAATGCGACTTTTGACCCTACCAAAAATCCAGATGTGACCACCCTCTCTGTTCAGTTACAGANACAAAATGATAAATCCAGTATACGTGATGGATGCCATGGTCATGGTACAGTGGAACAACATCAGAGTGGAAATTTGGCTAGTGGTAATGTGGATAATTCCAGCCAGAAAGGGCCCATTAATGCAGTTAGTAATCACGGTGGGCTTGATTCATTTTTGGATCTATGGGACACTGTGCAAGAGTTCTACTTTGATATCCATTACATCAAACGATTGGAATTGCACTCTGCTGCCCCTTTCGAAGTACATGGAATTGCTGTCTGTTGGGAAAACTCTCCTGTGTACTACATTAATCTTCCCAGGGATATTCTGTTGTCTGACAATAGAAAAGATGACTGTTTCNCCTTGAGTGCATGCAGTTATAAGCAGAAAGTTTCATCTTCTAATTCTAAGCAAGATTTGGTGAATGCCATGCATAGATGGAGCAGGATTAGTAAAATAATAGGGAGGGAAAATGTCAGAAAGTTCACCTGGAATTTGAAGATTCAGATTCAGGTGCTGAAAAAGCCNGCTGTTTCAGTTCAGAGATTTGGTTGCTTGGATAAAATTATGGACCTTGAAGTTGTAGACANTTCTTACATATTATTGCCCCCAATCCATGTTAAAGATGCAATTGACATGTGCATTGTGGCCTGGATTCTTTGGCCCGACGAAGAGAGGAGCTCTAATCCAAACTTGGATAAGGAGGTAAAGAAAAGGTTATCCTCTGAGGATGCTGCAGCGGCTAATCAGTGTGGCAGGTGGAGGAATCAGATGCGAAGAGCTGCTCATAATGGTTGCTGCCGCCGGGTTGCTCAAATACGAGCANTATGTTCAGTTCTTTGGAAATTACTTGTGTCTGAGGAACTTGTAGTTGTGCTTATGGGAATAGAAATCCCTTTGAGATGCATCCAGGCTCGTAAATTGTTGGTGAAAAGGTTGAAGCATCTTGAGAAGGAAGCTTATAAACTGGCTGGAATGACGTTTTCATTGCATATGCCGGCAGATATTGCAAAGGTGCTGTATGAACACTTGAAGCTGCCCATACCTGATGGGCGAAATAAGGGAAAACAACATCCAAGTACTGGCAAGCACTGTTTGGATGCACTGAGGCTATCTGTAAGCACACAGAAATACACATTACATGGTCATTGGCTCCAGACATCCACAGCTACTGGTCGGCTTTCNATGGAGGAGCCTAATCTTCAGTGTGTTGAGCATACAGTGGACTTCAAAATGAAAGGGGATGAAATTGGAGGTGATGCTGATGAGACTAATTGTAGAATTAATGCCCGTGACTTCTTTGTCCCTACTCAGGACAACTGGTTACTGTTAACGGCAGATTATTCTCAGATAGAACTGAGGTTGATGGCACACTTCTCTAAAGAATGTTCGCTTATTGAACTTCTCAGTANGCCTGATGGTGATGTCTTTACAATGATAGCAGCACGATGGATTGGGTGTCCTGAGGTTTCTGTGGGTTCTCAGCAGAGAGAGCAGACCAAAAGGATGGTGTATGGNATTCTTTATGGTATGGGTCCCAATAGCCTTGCAGAACAACTGGATTGCACTTCTGATGAAGCTTCTGAAAAGATTAGTAACTTCAAAAGCACTTTTCCTGGTGTTGCTTCCTGGCTTCACGAAGCCGTTGCATTNTGTCGTAGTAAAGGATATGTGGAGACTCTTAAGGGAAGGAAACGATTTTTGTCAAAAATAAAATTTGGCAGCAGTACAGAAAAATCAAAAGCTCAGAGGCAAGCTGTTAATTCCATTTGTCAGGGATCTGCTGCTGACATAATTAAAATTGCAATGATCAAAATTTACTCTGTAATTGTCACTGGAGTTGATAGCCTGGATTCCAGTTCTTCAGTTGCATCCAAGTTCCACACGCTTAGAGATCGTTGCCGGATTCTGTTACAGGTACATGATGAATTAGTGCTGGAAGTTNATCCTTCTGTGATAAAAGAAGCTGCCATACTGCTGCAGACAAGCATGGAGAATGCAGTCTCACTTCTTGTTCCTCTGCATGTCAAACTTAAGGTTGGAAGAACATGGGGATCTTTGGAGCCATTTACACCTGATAAATTCAAGGATGACACTCTCATCACTGAATCC

Protein Sequence

>Glyur000377s00019616.1
LINLFVPNCIKAALYQTXFRPVPLEEYIKVGNSIYNKSMELSRTIPKRADLGGKDPDHVVELCNEVVQEGQSVLIFCSSRKGCESTARHVAKFLNRFTVDINENDCEFADITSAINSLRKCPAGLDPVLEETLPAGVAFHHAGLTVEEREIVETCYRKGLLRVLTATSTLAAGVNLPARRVIFRQPRIGCDFIDGTRYKQMAGRAGRTGIDTKGESVLICKPEEVKKVMGLLNESCPPLNSCLSEDMNGMTHAILEVVAGGIVQTASDIHRYVRCTLLNSTKPFLDVVKSAQESLRWLCQRKFLEWNEDTKLYSTTPLGRASFGSSLCPEESLIVLADLSRAREGFVLASDLHLVYLVTPINVDVEPDWELYYERFVKLSPIDQSVGNRVGVTEPFLMRMAHGAPIXSSNKSRDNTRWLHNKRRNQLGISNGVVSSDDQTLRVCRRFYVALILSLLVQETPVGEVCDAFKVARGXVQALQENAGRFASMVAVFCERLGWQDLEGLVAKFQNRVSFGVRAEVVELTTIPYVKGSRARALYKAGLRTPLAIAEASIAEIVKALFESSSWATEGSAQRSLQFGVAKKIKNGARKIVLDKAEEARIAAFSAFKSLGYTVPQLAPPILSTAARDSIRQXAGSTSGSDTADTSHSFVDANHTDNSNIVALEKEREDLIKSSDNGALASVEGKSGNEMPCSLSTIPVAGPTTNELNATFDPTKNPDVTTLSVQLQXQNDKSSIRDGCHGHGTVEQHQSGNLASGNVDNSSQKGPINAVSNHGGLDSFLDLWDTVQEFYFDIHYIKRLELHSAAPFEVHGIAVCWENSPVYYINLPRDILLSDNRKDDCFXLSACSYKQKVSSSNSKQDLVNAMHRWSRISKIIGRENVRKFTWNLKIQIQVLKKPAVSVQRFGCLDKIMDLEVVDXSYILLPPIHVKDAIDMCIVAWILWPDEERSSNPNLDKEVKKRLSSEDAAAANQCGRWRNQMRRAAHNGCCRRVAQIRAXCSVLWKLLVSEELVVVLMGIEIPLRCIQARKLLVKRLKHLEKEAYKLAGMTFSLHMPADIAKVLYEHLKLPIPDGRNKGKQHPSTGKHCLDALRLSVSTQKYTLHGHWLQTSTATGRLSMEEPNLQCVEHTVDFKMKGDEIGGDADETNCRINARDFFVPTQDNWLLLTADYSQIELRLMAHFSKECSLIELLSXPDGDVFTMIAARWIGCPEVSVGSQQREQTKRMVYGILYGMGPNSLAEQLDCTSDEASEKISNFKSTFPGVASWLHEAVAXCRSKGYVETLKGRKRFLSKIKFGSSTEKSKAQRQAVNSICQGSAADIIKIAMIKIYSVIVTGVDSLDSSSSVASKFHTLRDRCRILLQVHDELVLEVXPSVIKEAAILLQTSMENAVSLLVPLHVKLKVGRTWGSLEPFTPDKFKDDTLITES

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00377	168881	178673	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006260 DNA replication

GO:0006261 DNA-dependent DNA replication

molecular_function

GO:0003676 nucleic acid binding

GO:0003677 DNA binding

GO:0003887 DNA-directed DNA polymerase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000377s00019616.1	PF00271.26	Helicase_C	137	209	9.00E-09
Glyur000377s00019616.1	PF00476.15	DNA_pol_A	1089	1408	1.80E-59

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.522
SRR1783600	control	0.553
SRR1783602	moderate drought stress	0.811
SRR1811619	moderate drought stress	0.798

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.366
DRR006520	Root Summer glycyrrhizin high producing strain	0.382
DRR006521	Root Winter glycyrrhizin high producing strain	1.261
DRR006522	Root Winter glycyrrhizin high producing strain	1.238
DRR006523	Root Summer glycyrrhizin low producing strain	0.339
DRR006524	Root Summer glycyrrhizin low producing strain	0.345
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.883
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.879

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	4.927
SRR2868004	Drought Stress (root)	3.834
SRR2967015	Control (root)	3.383

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.103
SRR9715740	Leaf	1.528
SRR9715741	Leaf	1.488
SRR9715739	Root	0.082
SRR9715742	Root	0.761
SRR9715743	Root	0.688

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.498
SRR8749028	MeJA induced 9h	2.470
SRR8749029	MeJA induced 9h	1.844
SRR8749030	Uninduced	2.188
SRR8749031	Uninduced	2.587
SRR8749032	Uninduced	1.605

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.099
SRR8400027	Control - Root	2.754