Gene detail

Gene detail information of Glyur000377s00019614

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G25610.1	9.00E-77	BURP domain-containing protein
NR	XP_003588551.1	0	BURP domain-containing protein [Medicago truncatula]
Swissprot	tr\|Q08298\|RD22_ARATH	3.00E-124	Dehydration-responsive protein RD22 (Precursor)
trEMBL	tr\|G7I4D4\|G7I4D4_MEDTR	0	Dehydration-responsive protein RD22 {ECO:0000313\|EMBL:AES58802.1}

Sequence

Transcript Sequence

>Glyur000377s00019614.1
ATGGAGTTTCCTCTTATTTCCATCTTTCTCTTACTCAATCTTGCACTGGTTGCAACCCATGCTGCCTTATTGCCCCCTGAATTTTACTGGAAGTCCAAGCTTCCCACTACTCCAATGCCCAAAGCCATCACAGATCTCCTGCACTCTGATTGGACAGAAGAGAAAAGCACCATAGTGGGTGTAGGGAAGGGTGGGGTAAATGTTGATGCTGGAAAAACAAAGCCAGGAGGAGGCACCTCAGTTAATGTGGGAAAAGGTGGAGTAAATGTGAATGCAGGAAAAGGAGGAAAGCCTGGTGGAGGCACATCAGTGAACGTTGGGAAAGGTGGTGTTAATGTACACACAGGAAAAGGAAAAGGAAAAGGAAAAGGGAAGCCAGTTCATGTTGCAGTTGGAAAATCTCCATTCAATTACATCTATGCTGCCACTGAGACCCAATTACATGATAACCCCAACATGGCACTCTTCTTCTTAGAAAAGGACTTACATCAAGGAACAAAATTGGACTTGCACTTCACCAAGACCTCCAATCCCACAACAACATTCTTCTTGCCTCGCCAAGTTGCTGATTCCATACCCTTTTCATCAAACAANGTGGAAAACATACTGAACGAGTTCTCCATCAAGCCAGAATCAGAGGAGGCTGAGACTGTGAAGAACACCATCAGTGAGTGTGAGGAGCCTGGCATTAAAGGAGAGGAGAAGCGTTGTGTCACTTCATTGGAGTCAATGGTTGATTTCACCACTTCTAAGCTTGGGAAAAATGTTGATGCTGTTTCTACTGAAGTGAACAAAGAAACTGAGTCACAACAACAGTACACCATAGCAAAGGGGGTGAAGAAGTTGGGAGGGGAAAATAATAAGGGGGTTGTTGTGTGCCACAAGCAGAAGTACCCATATGCAGTGTTTTACTGTCACAAGACAGATACCACTAGAGCTTACTCAGTGCCTTTGGAGGGTGCTGATGGGAGCAGAGTCAAAGCAGTTGCTGTGTGTCACACTGACACGTCACAATGGAATCCCAAGCATTTGGCCTTCCATGTCCTCAAAGTTCAACCAGGGACTGTTCCTGTTTGCCACTTCCTCCCTCAGGATCACGTTGTTTGGGTTTCCAAGTAGAAAAACAGACCCTTGAATAAATAGTCACAAACAACTACTTCNTAGCTTATATAATCATATTATAATACTTATACTTGCTTCATATATGTAGTAATATAGTTCGACCTTGCTAATAATACACACTATGTTTATTTGCATTATATATATATATATATATATGGTCACAAGGTTGCGGATGCCAATTATGTATTACTTGTATGGACTAAAGGCTGCGTGCCTATTATGCTTAGCACTATGTCTGTTCGAAATGGAATACAATATGCAATT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00377	166150	168172	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000377s00019614.1	PF03181.10	BURP	155	371	6.40E-94

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.093
SRR1783600	control	0.093
SRR1783602	moderate drought stress	0.468
SRR1811619	moderate drought stress	0.443

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.311
DRR006520	Root Summer glycyrrhizin high producing strain	0.309
DRR006521	Root Winter glycyrrhizin high producing strain	0.160
DRR006522	Root Winter glycyrrhizin high producing strain	0.156
DRR006523	Root Summer glycyrrhizin low producing strain	0.079
DRR006524	Root Summer glycyrrhizin low producing strain	0.079
DRR006525	Leaf Summer glycyrrhizin high producing strain	504.752
DRR006526	Leaf Summer glycyrrhizin high producing strain	507.560

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.747
SRR2868004	Drought Stress (root)	0.514
SRR2967015	Control (root)	0.669

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	439.317
SRR9715740	Leaf	680.199
SRR9715741	Leaf	439.978
SRR9715739	Root	0.071
SRR9715742	Root	7.834
SRR9715743	Root	6.062

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.051
SRR8749028	MeJA induced 9h	0.049
SRR8749029	MeJA induced 9h	0.132
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.332
SRR8400027	Control - Root	6.087